Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GE021_RS04460 | Genome accession | NZ_CP053792 |
| Coordinates | 888366..888758 (+) | Length | 130 a.a. |
| NCBI ID | WP_155782953.1 | Uniprot ID | - |
| Organism | Streptococcus canis strain HL_77_1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 883366..893758
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GE021_RS04400 (GE021_004400) | - | 883538..884449 (+) | 912 | WP_217267494.1 | DnaD domain protein | - |
| GE021_RS04405 (GE021_004405) | - | 884485..884712 (+) | 228 | WP_164407476.1 | hypothetical protein | - |
| GE021_RS04410 (GE021_004410) | - | 884726..884932 (+) | 207 | WP_155782846.1 | hypothetical protein | - |
| GE021_RS04415 (GE021_004415) | - | 884942..885127 (+) | 186 | WP_085577387.1 | hypothetical protein | - |
| GE021_RS04420 (GE021_004420) | - | 885124..885288 (+) | 165 | WP_164407478.1 | hypothetical protein | - |
| GE021_RS04425 (GE021_004425) | - | 885285..885569 (+) | 285 | WP_164407480.1 | hypothetical protein | - |
| GE021_RS04430 (GE021_004430) | - | 885573..886055 (+) | 483 | WP_164407482.1 | class I SAM-dependent methyltransferase | - |
| GE021_RS04435 (GE021_004435) | - | 886057..886791 (+) | 735 | WP_164407484.1 | DNA cytosine methyltransferase | - |
| GE021_RS04440 (GE021_004440) | - | 886772..887275 (+) | 504 | WP_254388134.1 | DNA cytosine methyltransferase | - |
| GE021_RS11125 | - | 887265..887831 (+) | 567 | WP_164407486.1 | DUF3310 domain-containing protein | - |
| GE021_RS04450 (GE021_004450) | - | 887824..888156 (+) | 333 | WP_002986215.1 | hypothetical protein | - |
| GE021_RS04455 (GE021_004455) | - | 888149..888376 (+) | 228 | WP_164407488.1 | hypothetical protein | - |
| GE021_RS04460 (GE021_004460) | ssb | 888366..888758 (+) | 393 | WP_155782953.1 | single-stranded DNA-binding protein | Machinery gene |
| GE021_RS04465 (GE021_004465) | - | 888772..889050 (+) | 279 | WP_029713970.1 | hypothetical protein | - |
| GE021_RS04470 (GE021_004470) | - | 889047..889388 (+) | 342 | WP_164407490.1 | helix-turn-helix domain-containing protein | - |
| GE021_RS04475 (GE021_004475) | - | 889511..890338 (+) | 828 | WP_164407492.1 | prohibitin family protein | - |
| GE021_RS04480 (GE021_004480) | - | 890353..890754 (+) | 402 | WP_164407495.1 | transcriptional regulator | - |
| GE021_RS04485 (GE021_004485) | - | 890914..891489 (+) | 576 | WP_011054435.1 | site-specific integrase | - |
| GE021_RS04490 (GE021_004490) | - | 891643..891939 (+) | 297 | WP_164407497.1 | hypothetical protein | - |
| GE021_RS04495 (GE021_004495) | - | 891978..892364 (+) | 387 | WP_164407499.1 | hypothetical protein | - |
| GE021_RS04500 (GE021_004500) | - | 892357..892662 (+) | 306 | WP_164407501.1 | HNH endonuclease | - |
| GE021_RS04505 (GE021_004505) | - | 892805..893122 (+) | 318 | WP_164407503.1 | P27 family phage terminase small subunit | - |
Sequence
Protein
Download Length: 130 a.a. Molecular weight: 14871.80 Da Isoelectric Point: 7.1330
>NTDB_id=447275 GE021_RS04460 WP_155782953.1 888366..888758(+) (ssb) [Streptococcus canis strain HL_77_1]
MINNVVLIGRLTKDVELRYTPSQVACAQFTLAVNRHFKNQDGQKVADFINCVMWRQAAENLTNWTKKGHLIAITGRIQTR
NYENQQGQRVYVTEVVAENFQILEKRDNTANTNSLADTMPDYGPEPDLPF
MINNVVLIGRLTKDVELRYTPSQVACAQFTLAVNRHFKNQDGQKVADFINCVMWRQAAENLTNWTKKGHLIAITGRIQTR
NYENQQGQRVYVTEVVAENFQILEKRDNTANTNSLADTMPDYGPEPDLPF
Nucleotide
Download Length: 393 bp
>NTDB_id=447275 GE021_RS04460 WP_155782953.1 888366..888758(+) (ssb) [Streptococcus canis strain HL_77_1]
ATGATCAATAACGTTGTCTTGATTGGCCGCTTAACCAAAGATGTTGAGCTACGCTATACACCAAGTCAAGTAGCTTGCGC
ACAGTTTACTTTAGCAGTTAATCGTCATTTTAAAAATCAAGATGGGCAAAAAGTAGCTGATTTTATTAATTGTGTGATGT
GGCGACAAGCTGCTGAAAATTTAACAAATTGGACTAAAAAGGGCCATCTGATTGCGATAACAGGACGCATTCAGACCCGT
AACTATGAGAATCAACAAGGTCAACGTGTTTACGTGACAGAAGTGGTTGCCGAAAACTTTCAGATTCTTGAAAAGCGTGA
CAATACAGCTAACACAAATAGCTTGGCAGATACCATGCCAGACTATGGACCAGAACCAGATTTACCATTTTAG
ATGATCAATAACGTTGTCTTGATTGGCCGCTTAACCAAAGATGTTGAGCTACGCTATACACCAAGTCAAGTAGCTTGCGC
ACAGTTTACTTTAGCAGTTAATCGTCATTTTAAAAATCAAGATGGGCAAAAAGTAGCTGATTTTATTAATTGTGTGATGT
GGCGACAAGCTGCTGAAAATTTAACAAATTGGACTAAAAAGGGCCATCTGATTGCGATAACAGGACGCATTCAGACCCGT
AACTATGAGAATCAACAAGGTCAACGTGTTTACGTGACAGAAGTGGTTGCCGAAAACTTTCAGATTCTTGAAAAGCGTGA
CAATACAGCTAACACAAATAGCTTGGCAGATACCATGCCAGACTATGGACCAGAACCAGATTTACCATTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
65.138 |
83.846 |
0.546 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
66.355 |
82.308 |
0.546 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
46.212 |
100 |
0.469 |
| ssbA | Streptococcus mutans UA159 |
43.704 |
100 |
0.454 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
43.182 |
100 |
0.438 |
| ssbB/cilA | Streptococcus mitis SK321 |
42.424 |
100 |
0.431 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
42.424 |
100 |
0.431 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
42.424 |
100 |
0.431 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
42.424 |
100 |
0.431 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
42.424 |
100 |
0.431 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
51.887 |
81.538 |
0.423 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
39.535 |
99.231 |
0.392 |