Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HPG46_RS10500 Genome accession   NZ_CP053656
Coordinates   2019784..2020143 (+) Length   119 a.a.
NCBI ID   WP_000982028.1    Uniprot ID   A0A150B2F8
Organism   Bacillus cereus strain CTMA_1571     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2014784..2025143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPG46_RS10475 (HPG46_10055) - 2015012..2015809 (-) 798 WP_171855921.1 hypothetical protein -
  HPG46_RS10480 (HPG46_10060) - 2015919..2016566 (+) 648 WP_000165938.1 HD domain-containing protein -
  HPG46_RS10485 (HPG46_10065) - 2016563..2018458 (+) 1896 WP_000783201.1 ABC-F family ATP-binding cassette domain-containing protein -
  HPG46_RS10490 (HPG46_10070) - 2018534..2019265 (+) 732 WP_001260645.1 Bax inhibitor-1/YccA family protein -
  HPG46_RS10495 (HPG46_10075) - 2019371..2019625 (+) 255 WP_017561864.1 DUF4318 domain-containing protein -
  HPG46_RS10500 (HPG46_10080) ssbA 2019784..2020143 (+) 360 WP_000982028.1 single-stranded DNA-binding protein Machinery gene
  HPG46_RS10505 (HPG46_10085) - 2020264..2021391 (+) 1128 WP_000692577.1 conserved virulence factor C family protein -
  HPG46_RS10510 (HPG46_10090) - 2021395..2021778 (+) 384 WP_000634868.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  HPG46_RS10515 (HPG46_10095) - 2021862..2022296 (+) 435 WP_000063712.1 BrxA/BrxB family bacilliredoxin -
  HPG46_RS10520 (HPG46_10100) - 2022346..2023122 (+) 777 WP_000637445.1 class I SAM-dependent methyltransferase -
  HPG46_RS10525 (HPG46_10105) argS 2023423..2025111 (+) 1689 WP_171855922.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13678.65 Da        Isoelectric Point: 9.6554

>NTDB_id=446009 HPG46_RS10500 WP_000982028.1 2019784..2020143(+) (ssbA) [Bacillus cereus strain CTMA_1571]
MMNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCKKGSLVGITGRIHTR
NYEDDQGKRIYITEVVIENITFLEKRREGASKKDGTWGN

Nucleotide


Download         Length: 360 bp        

>NTDB_id=446009 HPG46_RS10500 WP_000982028.1 2019784..2020143(+) (ssbA) [Bacillus cereus strain CTMA_1571]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAGCAAGGCGTTGCGTATGC
ACGAGTATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTAGATTTTATTAATTGTGTCGTAT
GGCGAAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAAGGGTCTCTTGTTGGAATTACCGGACGTATTCATACGAGG
AATTACGAGGATGATCAAGGAAAGAGAATATATATAACGGAAGTTGTGATTGAAAATATTACATTTTTGGAGAAAAGACG
GGAAGGGGCATCAAAAAAAGATGGAACGTGGGGAAATTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150B2F8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

89.076

0.521
  ssb Latilactobacillus sakei subsp. sakei 23K

57.547

89.076

0.513
  ssbB Bacillus subtilis subsp. subtilis str. 168

52.679

94.118

0.496
  ssbB Lactococcus lactis subsp. cremoris KW2

46.552

97.479

0.454
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.982

95.798

0.412
  ssbA Streptococcus mutans UA159

40.517

97.479

0.395
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.351

95.798

0.387
  ssbB/cilA Streptococcus mitis NCTC 12261

40.351

95.798

0.387
  ssbB/cilA Streptococcus pneumoniae Rx1

39.474

95.798

0.378
  ssbB/cilA Streptococcus pneumoniae D39

39.474

95.798

0.378
  ssbB/cilA Streptococcus pneumoniae R6

39.474

95.798

0.378
  ssbB/cilA Streptococcus mitis SK321

39.474

95.798

0.378