Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EYQ96_RS05630 Genome accession   NZ_CP053477
Coordinates   1066423..1066806 (+) Length   127 a.a.
NCBI ID   WP_023373316.1    Uniprot ID   -
Organism   Staphylococcus warneri strain WB224     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1061423..1071806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYQ96_RS05600 (EYQ96_05620) atpD 1061668..1063080 (+) 1413 WP_002451653.1 F0F1 ATP synthase subunit beta -
  EYQ96_RS05605 (EYQ96_05625) - 1063100..1063504 (+) 405 WP_002451652.1 F0F1 ATP synthase subunit epsilon -
  EYQ96_RS05610 (EYQ96_05630) - 1063656..1063889 (+) 234 WP_023373322.1 DUF1146 family protein -
  EYQ96_RS05615 (EYQ96_05635) murA 1064001..1065266 (+) 1266 WP_023373320.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  EYQ96_RS05620 (EYQ96_05640) fabZ 1065310..1065750 (+) 441 WP_002451649.1 3-hydroxyacyl-ACP dehydratase FabZ -
  EYQ96_RS05625 (EYQ96_05645) - 1065796..1066236 (-) 441 WP_023373318.1 YwpF-like family protein -
  EYQ96_RS05630 (EYQ96_05650) ssb 1066423..1066806 (+) 384 WP_023373316.1 single-stranded DNA-binding protein Machinery gene
  EYQ96_RS05635 (EYQ96_05655) - 1067216..1067947 (+) 732 WP_023373314.1 transglycosylase family protein -
  EYQ96_RS05640 (EYQ96_05660) tenA 1068290..1068979 (+) 690 WP_171484896.1 thiaminase II -
  EYQ96_RS05645 (EYQ96_05665) thiD 1068972..1069793 (+) 822 WP_023373310.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  EYQ96_RS05650 (EYQ96_05670) thiM 1069786..1070577 (+) 792 WP_023373308.1 hydroxyethylthiazole kinase -
  EYQ96_RS05655 (EYQ96_05675) thiE 1070578..1071219 (+) 642 WP_023373306.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14526.47 Da        Isoelectric Point: 7.0817

>NTDB_id=444923 EYQ96_RS05630 WP_023373316.1 1066423..1066806(+) (ssb) [Staphylococcus warneri strain WB224]
MLNKIVLVGRLTKDAQIFEKEEGSKIATFCVATERNYKDQNNEVACDYLYCKAFGKTAMNIEKYTSQGSLVGITGQMRSR
KYEKDNQTHFVTEVYVETIKFMSSKTKESNILSNELNEAQNECFHIG

Nucleotide


Download         Length: 384 bp        

>NTDB_id=444923 EYQ96_RS05630 WP_023373316.1 1066423..1066806(+) (ssb) [Staphylococcus warneri strain WB224]
ATGTTAAATAAAATAGTTTTAGTTGGCAGACTTACAAAGGATGCCCAAATTTTTGAAAAGGAGGAAGGTAGTAAGATAGC
AACATTTTGTGTTGCTACGGAAAGAAATTATAAAGATCAGAACAATGAAGTCGCATGCGATTACCTATATTGTAAAGCCT
TTGGTAAAACAGCTATGAATATTGAAAAGTATACATCACAAGGTTCTTTAGTAGGTATTACAGGTCAAATGCGATCTCGT
AAATACGAAAAAGATAATCAGACACATTTTGTAACTGAAGTTTATGTAGAAACAATTAAATTTATGTCCTCTAAGACAAA
AGAATCCAATATCCTCTCTAACGAATTAAATGAAGCACAAAATGAATGCTTTCATATAGGTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

77.586

91.339

0.709
  ssb Staphylococcus aureus MW2

76.724

91.339

0.701