Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   EYQ96_RS05910 Genome accession   NZ_CP053477
Coordinates   1122531..1123247 (-) Length   238 a.a.
NCBI ID   WP_002466277.1    Uniprot ID   -
Organism   Staphylococcus warneri strain WB224     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1124226..1125398 1122531..1123247 flank 979


Gene organization within MGE regions


Location: 1122531..1125398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYQ96_RS05910 (EYQ96_05930) agrA 1122531..1123247 (-) 717 WP_002466277.1 quorum-sensing response regulator AgrA Regulator
  EYQ96_RS05915 (EYQ96_05935) agrC 1123260..1124204 (-) 945 Protein_1062 quorum-sensing sensor histidine kinase AgrC -
  EYQ96_RS05920 (EYQ96_05940) - 1124226..1125398 (+) 1173 WP_000195429.1 IS256-like element IS256 family transposase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27897.92 Da        Isoelectric Point: 5.9175

>NTDB_id=444924 EYQ96_RS05910 WP_002466277.1 1122531..1123247(-) (agrA) [Staphylococcus warneri strain WB224]
MKIFICEDDPKQRENMASIIKNYIMIEEKPMELALATDDPYEVLEQSKNMNDIGCYFLDIQLEADINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELKTRIIDCLETAHTRLKLLSKESNVETIELKRGSNSVYVQYDDIM
FFESSSKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVINRRNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=444924 EYQ96_RS05910 WP_002466277.1 1122531..1123247(-) (agrA) [Staphylococcus warneri strain WB224]
ATGAAAATATTCATTTGCGAAGATGATCCAAAACAACGAGAAAATATGGCTTCAATTATTAAAAATTATATTATGATTGA
GGAAAAGCCTATGGAGCTTGCTCTCGCAACTGATGATCCTTATGAAGTGCTTGAGCAATCCAAAAATATGAACGACATCG
GTTGTTATTTCTTAGATATTCAACTTGAAGCTGATATTAATGGCATTAAATTAGGTAGTGAAATTCGAAAACATGATCCC
GTAGGTAATATCATTTTTGTAACAAGTCATAGTGAATTAACATATCTCACTTTCGTTTATAAAGTGGCTGCAATGGATTT
TATATTCAAAGATGATCCTGCAGAACTGAAAACACGTATTATCGATTGTTTAGAAACAGCTCACACAAGACTCAAATTAT
TATCTAAAGAAAGTAATGTAGAAACAATTGAGTTAAAGCGTGGTAGTAATTCAGTTTATGTACAATATGACGATATTATG
TTTTTCGAATCATCTAGTAAATCACACCGATTAATTGCACATTTAGATAATAGACAAATCGAATTTTATGGTAATCTTAA
AGAATTAAGTCAATTAGATGATCGTTTCTTTAGATGCCATAATAGCTTTGTGATTAATAGGAGAAATATTGAGTCCATTG
ATTCTAAAGAACGCATTGTCTATTTTAAAAATAAAGAGCACTGTTATGCATCAGTTCGTAATGTCAAAAAGATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

93.697

100

0.937