Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   HLK66_RS20765 Genome accession   NZ_CP053315
Coordinates   4238691..4239032 (-) Length   113 a.a.
NCBI ID   WP_095329937.1    Uniprot ID   -
Organism   Niallia circulans strain GN03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4233691..4244032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLK66_RS20750 (HLK66_20760) - 4237056..4237802 (-) 747 WP_171509966.1 WecB/TagA/CpsF family glycosyltransferase -
  HLK66_RS20755 (HLK66_20765) - 4238149..4238295 (+) 147 WP_095329938.1 anti-repressor SinI family protein -
  HLK66_RS20760 (HLK66_20770) - 4238530..4238676 (-) 147 WP_164463704.1 hypothetical protein -
  HLK66_RS20765 (HLK66_20775) ssbB 4238691..4239032 (-) 342 WP_095329937.1 single-stranded DNA-binding protein Machinery gene
  HLK66_RS20770 (HLK66_20780) - 4239301..4241037 (-) 1737 WP_123258261.1 phospho-sugar mutase -
  HLK66_RS20775 (HLK66_20785) - 4241202..4241708 (-) 507 WP_095329935.1 cupin domain-containing protein -
  HLK66_RS20780 (HLK66_20790) - 4241945..4243627 (+) 1683 WP_171509967.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12901.63 Da        Isoelectric Point: 8.4703

>NTDB_id=444086 HLK66_RS20765 WP_095329937.1 4238691..4239032(-) (ssbB) [Niallia circulans strain GN03]
MINQVTLVGRLTKDPELRVTQEGTSIVHVTVAVNRNYKNQAGDYDADFVQCTFWNKVAENTAQYCHKGSLVGVVGRIQTR
NYENQERKKVYVTEVIAESVRFLDPKKLEQTIP

Nucleotide


Download         Length: 342 bp        

>NTDB_id=444086 HLK66_RS20765 WP_095329937.1 4238691..4239032(-) (ssbB) [Niallia circulans strain GN03]
ATGATCAATCAAGTTACTTTAGTAGGAAGGCTAACGAAAGATCCAGAACTGCGAGTAACACAAGAAGGAACTTCTATTGT
CCATGTGACTGTTGCAGTAAATAGAAACTACAAGAATCAAGCTGGTGATTATGATGCAGATTTTGTGCAATGTACCTTTT
GGAATAAGGTAGCGGAAAATACAGCTCAGTATTGTCATAAAGGCTCTCTAGTTGGAGTCGTTGGCCGAATACAGACAAGA
AACTATGAAAATCAAGAGCGGAAAAAGGTCTATGTAACAGAAGTTATTGCTGAATCCGTACGTTTCTTGGACCCTAAAAA
ACTAGAACAAACCATTCCTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.455

97.345

0.637
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.434

93.805

0.558
  ssb Latilactobacillus sakei subsp. sakei 23K

52.83

93.805

0.496
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.226

93.805

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.396

93.805

0.407
  ssbB/cilA Streptococcus mitis NCTC 12261

43.396

93.805

0.407
  ssbB/cilA Streptococcus pneumoniae Rx1

42.453

93.805

0.398
  ssbB/cilA Streptococcus pneumoniae D39

42.453

93.805

0.398
  ssbB/cilA Streptococcus pneumoniae R6

42.453

93.805

0.398
  ssbB/cilA Streptococcus mitis SK321

42.453

93.805

0.398
  ssbB Lactococcus lactis subsp. cremoris KW2

42.857

92.92

0.398
  ssbA Streptococcus mutans UA159

41.509

93.805

0.389