Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HHJ24_RS04505 Genome accession   NZ_CP053234
Coordinates   891644..892273 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain SCU-106     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 886644..897273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ24_RS04485 (HHJ24_04485) ycbZ 887034..888794 (-) 1761 WP_000156526.1 Lon protease family protein -
  HHJ24_RS04490 (HHJ24_04490) matP 888980..889432 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  HHJ24_RS04495 (HHJ24_04495) ompA 889507..890559 (-) 1053 WP_001361736.1 porin OmpA -
  HHJ24_RS04500 (HHJ24_04500) sulA 890916..891425 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HHJ24_RS04505 (HHJ24_04505) sxy/tfoX 891644..892273 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HHJ24_RS04510 (HHJ24_04510) yccS 892236..894398 (-) 2163 WP_000875046.1 YccS family putative transporter -
  HHJ24_RS04515 (HHJ24_04515) yccF 894408..894854 (-) 447 WP_001261235.1 YccF domain-containing protein -
  HHJ24_RS04520 (HHJ24_04520) helD 894977..897031 (+) 2055 WP_001315388.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=443669 HHJ24_RS04505 WP_000839153.1 891644..892273(+) (sxy/tfoX) [Escherichia coli strain SCU-106]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=443669 HHJ24_RS04505 WP_000839153.1 891644..892273(+) (sxy/tfoX) [Escherichia coli strain SCU-106]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1