Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | IUD25_RS10210 | Genome accession | NZ_CP064328 |
| Coordinates | 2275538..2275978 (+) | Length | 146 a.a. |
| NCBI ID | WP_004090375.1 | Uniprot ID | B2I9R0 |
| Organism | Xylella fastidiosa subsp. fastidiosa strain Bakersfield-14 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2270538..2280978
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IUD25_RS10185 (IUD25_10185) | coaE | 2270635..2271258 (-) | 624 | WP_194957354.1 | dephospho-CoA kinase | - |
| IUD25_RS10190 (IUD25_10190) | pilD | 2271270..2272133 (-) | 864 | WP_004084594.1 | A24 family peptidase | Machinery gene |
| IUD25_RS10195 (IUD25_10195) | pilC | 2272140..2273342 (-) | 1203 | WP_011098309.1 | type II secretion system F family protein | Machinery gene |
| IUD25_RS10200 (IUD25_10200) | pilA | 2273783..2274229 (+) | 447 | WP_004090380.1 | pilin | Machinery gene |
| IUD25_RS10205 (IUD25_10205) | - | 2274475..2274702 (-) | 228 | WP_011098310.1 | hypothetical protein | - |
| IUD25_RS10210 (IUD25_10210) | pilA/pilAI | 2275538..2275978 (+) | 441 | WP_004090375.1 | pilin | Machinery gene |
| IUD25_RS10215 (IUD25_10215) | pilB | 2276821..2278554 (+) | 1734 | WP_004090374.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| IUD25_RS10220 (IUD25_10220) | - | 2278648..2280060 (-) | 1413 | WP_004090373.1 | sigma-54 dependent transcriptional regulator | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 14977.25 Da Isoelectric Point: 8.1165
>NTDB_id=442696 IUD25_RS10210 WP_004090375.1 2275538..2275978(+) (pilA/pilAI) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-14]
MKKQQGFTLIELMIVIAIIAILAAIALPMYQNYVARSQVAAALAEITPGRTQAEIRMADGQASNTPNAIGLRSPTTRCSL
VVVDITTTGGAIVCTMIGNGQVNNQTITLTRIADNNAGQGGVNTGGNWTCTTTAPAALTPAGCTGT
MKKQQGFTLIELMIVIAIIAILAAIALPMYQNYVARSQVAAALAEITPGRTQAEIRMADGQASNTPNAIGLRSPTTRCSL
VVVDITTTGGAIVCTMIGNGQVNNQTITLTRIADNNAGQGGVNTGGNWTCTTTAPAALTPAGCTGT
Nucleotide
Download Length: 441 bp
>NTDB_id=442696 IUD25_RS10210 WP_004090375.1 2275538..2275978(+) (pilA/pilAI) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-14]
ATGAAAAAGCAACAAGGCTTCACTTTGATCGAGCTGATGATCGTCATTGCGATCATCGCCATCCTGGCAGCGATCGCTCT
GCCCATGTACCAAAATTATGTCGCCAGGTCTCAAGTCGCAGCGGCACTAGCCGAGATCACACCGGGCCGAACACAAGCCG
AAATCCGTATGGCTGATGGACAGGCTTCAAACACTCCTAACGCTATTGGACTACGCAGCCCGACCACTCGTTGCAGCCTC
GTTGTGGTGGACATCACAACTACTGGCGGCGCAATCGTATGTACGATGATTGGTAATGGTCAGGTCAACAATCAAACTAT
CACCTTGACCCGCATCGCTGATAACAACGCAGGCCAAGGTGGCGTCAATACTGGGGGGAACTGGACCTGCACCACAACCG
CGCCTGCAGCGTTAACTCCAGCAGGCTGCACTGGAACTTAA
ATGAAAAAGCAACAAGGCTTCACTTTGATCGAGCTGATGATCGTCATTGCGATCATCGCCATCCTGGCAGCGATCGCTCT
GCCCATGTACCAAAATTATGTCGCCAGGTCTCAAGTCGCAGCGGCACTAGCCGAGATCACACCGGGCCGAACACAAGCCG
AAATCCGTATGGCTGATGGACAGGCTTCAAACACTCCTAACGCTATTGGACTACGCAGCCCGACCACTCGTTGCAGCCTC
GTTGTGGTGGACATCACAACTACTGGCGGCGCAATCGTATGTACGATGATTGGTAATGGTCAGGTCAACAATCAAACTAT
CACCTTGACCCGCATCGCTGATAACAACGCAGGCCAAGGTGGCGTCAATACTGGGGGGAACTGGACCTGCACCACAACCG
CGCCTGCAGCGTTAACTCCAGCAGGCTGCACTGGAACTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
45.27 |
100 |
0.459 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
42.466 |
100 |
0.425 |
| pilA | Acinetobacter baumannii strain A118 |
41.216 |
100 |
0.418 |
| pilA | Pseudomonas aeruginosa PAK |
37.736 |
100 |
0.411 |
| pilA | Vibrio cholerae C6706 |
37.908 |
100 |
0.397 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
37.908 |
100 |
0.397 |
| pilA | Vibrio cholerae strain A1552 |
37.908 |
100 |
0.397 |
| pilA | Haemophilus influenzae 86-028NP |
37.162 |
100 |
0.377 |
| comP | Acinetobacter baylyi ADP1 |
35.256 |
100 |
0.377 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
37.241 |
99.315 |
0.37 |