NTDB

Overview

Name	comGF	Type	Machinery gene
Locus tag	HH313_RS07860	Genome accession	NZ_CP053070
Coordinates	1631423..1631920 (-)	Length	165 a.a.
NCBI ID	WP_001838632.1	Uniprot ID	A0A6A9GZK7
Organism	Staphylococcus aureus strain HL20709 isolate HL20709
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1626423..1636920

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HH313_RS07835 (HH313_001571)	gcvPB	1626585..1628057 (-)	1473	WP_000202177.1	aminomethyl-transferring glycine dehydrogenase subunit GcvPB	-
HH313_RS07840 (HH313_001572)	gcvPA	1628050..1629396 (-)	1347	WP_000019687.1	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	-
HH313_RS07845 (HH313_001573)	gcvT	1629416..1630507 (-)	1092	WP_000093349.1	glycine cleavage system aminomethyltransferase GcvT	-
HH313_RS07850 (HH313_001574)	-	1630666..1631190 (-)	525	WP_001015116.1	shikimate kinase	-
HH313_RS07855 (HH313_001575)	-	1631180..1631326 (-)	147	WP_001789879.1	hypothetical protein	-
HH313_RS07860 (HH313_001576)	comGF	1631423..1631920 (-)	498	WP_001838632.1	competence type IV pilus minor pilin ComGF	Machinery gene
HH313_RS07865 (HH313_001577)	comGE	1631838..1632137 (-)	300	WP_000844413.1	hypothetical protein	Machinery gene
HH313_RS07870 (HH313_001578)	comGD	1632124..1632570 (-)	447	WP_001796473.1	competence type IV pilus minor pilin ComGD	Machinery gene
HH313_RS07875 (HH313_001579)	comGC	1632548..1632859 (-)	312	WP_000472256.1	competence type IV pilus major pilin ComGC	Machinery gene
HH313_RS07880 (HH313_001580)	comGB	1632873..1633943 (-)	1071	WP_000776407.1	competence type IV pilus assembly protein ComGB	Machinery gene
HH313_RS07885 (HH313_001581)	comGA	1633915..1634889 (-)	975	WP_000697218.1	competence type IV pilus ATPase ComGA	Machinery gene
HH313_RS07890 (HH313_001582)	-	1634941..1635564 (-)	624	WP_001223008.1	MBL fold metallo-hydrolase	-
HH313_RS07895 (HH313_001583)	-	1635561..1635890 (-)	330	WP_001018871.1	MTH1187 family thiamine-binding protein	-
HH313_RS07900 (HH313_001584)	-	1635890..1636876 (-)	987	WP_000161315.1	ROK family glucokinase	-

Sequence

Protein

Download Length: 165 a.a. Molecular weight: 19184.87 Da Isoelectric Point: 10.2192

                                >NTDB_id=442695 HH313_RS07860 WP_001838632.1 1631423..1631920(-) (comGF) [Staphylococcus aureus strain HL20709 isolate HL20709]

MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI

LEDFKGVDRNNIENREQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT

KTIYV

Nucleotide

Download Length: 498 bp

                                >NTDB_id=442695 HH313_RS07860 WP_001838632.1 1631423..1631920(-) (comGF) [Staphylococcus aureus strain HL20709 isolate HL20709]

ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT

TAATGTCAAAGCTTTTTCTCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT

TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT

CTAGAGGATTTTAAAGGAGTAGATAGAAACAATATTGAAAATAGGGAACAGCGTATCATTTTACATAAAGGTGAAGAAAT

GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA

CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT

AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(68-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A6A9GZK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comGF	Staphylococcus aureus N315	96.364	100	0.964
comGF	Staphylococcus aureus MW2	96.364	100	0.964

Detailed information NTG0442695