Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | IUD25_RS10200 | Genome accession | NZ_CP064328 |
| Coordinates | 2273783..2274229 (+) | Length | 148 a.a. |
| NCBI ID | WP_004090380.1 | Uniprot ID | - |
| Organism | Xylella fastidiosa subsp. fastidiosa strain Bakersfield-14 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2268783..2279229
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IUD25_RS10180 (IUD25_10180) | - | 2269031..2270368 (+) | 1338 | WP_004090387.1 | HAMP domain-containing sensor histidine kinase | - |
| IUD25_RS10185 (IUD25_10185) | coaE | 2270635..2271258 (-) | 624 | WP_194957354.1 | dephospho-CoA kinase | - |
| IUD25_RS10190 (IUD25_10190) | pilD | 2271270..2272133 (-) | 864 | WP_004084594.1 | A24 family peptidase | Machinery gene |
| IUD25_RS10195 (IUD25_10195) | pilC | 2272140..2273342 (-) | 1203 | WP_011098309.1 | type II secretion system F family protein | Machinery gene |
| IUD25_RS10200 (IUD25_10200) | pilA | 2273783..2274229 (+) | 447 | WP_004090380.1 | pilin | Machinery gene |
| IUD25_RS10205 (IUD25_10205) | - | 2274475..2274702 (-) | 228 | WP_011098310.1 | hypothetical protein | - |
| IUD25_RS10210 (IUD25_10210) | pilA/pilAI | 2275538..2275978 (+) | 441 | WP_004090375.1 | pilin | Machinery gene |
| IUD25_RS10215 (IUD25_10215) | pilB | 2276821..2278554 (+) | 1734 | WP_004090374.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 15388.46 Da Isoelectric Point: 8.5024
>NTDB_id=442695 IUD25_RS10200 WP_004090380.1 2273783..2274229(+) (pilA) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-14]
MKKQQGFNLIELMIVIAIIAVLAAIALPMYQNYVARSQVTAGLADITPGKVQAESLIADGKSTTNASDIGLRTDTTRCGI
TVKVENTGLANITCTIKGNSQVNGQTIAWNRSVDNSAGTNGANNGGQWTCNTTVTSDALRPSGCTAAK
MKKQQGFNLIELMIVIAIIAVLAAIALPMYQNYVARSQVTAGLADITPGKVQAESLIADGKSTTNASDIGLRTDTTRCGI
TVKVENTGLANITCTIKGNSQVNGQTIAWNRSVDNSAGTNGANNGGQWTCNTTVTSDALRPSGCTAAK
Nucleotide
Download Length: 447 bp
>NTDB_id=442695 IUD25_RS10200 WP_004090380.1 2273783..2274229(+) (pilA) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-14]
ATGAAAAAGCAACAAGGTTTTAACTTAATCGAACTAATGATCGTCATTGCAATCATTGCTGTTCTGGCGGCCATCGCTCT
GCCCATGTACCAAAATTATGTTGCCAGATCCCAAGTCACCGCGGGACTGGCTGACATTACACCGGGTAAGGTGCAAGCCG
AGTCTCTGATTGCTGATGGGAAGAGTACAACCAATGCGAGCGATATTGGACTGCGCACCGACACCACTCGTTGTGGGATT
ACCGTTAAAGTCGAAAACACCGGACTTGCCAACATCACATGTACGATTAAGGGCAATTCTCAGGTGAATGGTCAAACCAT
CGCTTGGAATCGTAGCGTCGATAACTCCGCGGGCACCAATGGCGCCAATAATGGAGGTCAGTGGACATGCAACACCACTG
TGACATCCGATGCACTGAGACCTTCCGGCTGCACTGCCGCTAAATAA
ATGAAAAAGCAACAAGGTTTTAACTTAATCGAACTAATGATCGTCATTGCAATCATTGCTGTTCTGGCGGCCATCGCTCT
GCCCATGTACCAAAATTATGTTGCCAGATCCCAAGTCACCGCGGGACTGGCTGACATTACACCGGGTAAGGTGCAAGCCG
AGTCTCTGATTGCTGATGGGAAGAGTACAACCAATGCGAGCGATATTGGACTGCGCACCGACACCACTCGTTGTGGGATT
ACCGTTAAAGTCGAAAACACCGGACTTGCCAACATCACATGTACGATTAAGGGCAATTCTCAGGTGAATGGTCAAACCAT
CGCTTGGAATCGTAGCGTCGATAACTCCGCGGGCACCAATGGCGCCAATAATGGAGGTCAGTGGACATGCAACACCACTG
TGACATCCGATGCACTGAGACCTTCCGGCTGCACTGCCGCTAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
42.177 |
99.324 |
0.419 |
| pilA | Vibrio cholerae strain A1552 |
42.177 |
99.324 |
0.419 |
| pilA | Vibrio cholerae C6706 |
42.177 |
99.324 |
0.419 |
| pilA | Acinetobacter baumannii strain A118 |
41.333 |
100 |
0.419 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40.541 |
100 |
0.405 |
| pilA | Pseudomonas aeruginosa PAK |
36.875 |
100 |
0.399 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
39.726 |
98.649 |
0.392 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
37.162 |
100 |
0.372 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
34.591 |
100 |
0.372 |