Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HKW99_RS15510 Genome accession   NZ_CP053061
Coordinates   3303757..3304974 (-) Length   405 a.a.
NCBI ID   WP_407292128.1    Uniprot ID   -
Organism   Stutzerimonas zhaodongensis strain JZ60     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3298757..3309974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKW99_RS15475 (HKW99_15405) rpsI 3298814..3299206 (-) 393 WP_131649936.1 30S ribosomal protein S9 -
  HKW99_RS15480 (HKW99_15410) rplM 3299221..3299649 (-) 429 WP_019342644.1 50S ribosomal protein L13 -
  HKW99_RS15485 (HKW99_15415) - 3300040..3301077 (+) 1038 WP_407292116.1 NADP(H)-dependent aldo-keto reductase -
  HKW99_RS15490 (HKW99_15420) - 3301163..3301855 (+) 693 WP_407292118.1 energy-coupling factor ABC transporter permease -
  HKW99_RS15495 (HKW99_15425) yacG 3301892..3302089 (-) 198 WP_407292121.1 DNA gyrase inhibitor YacG -
  HKW99_RS15500 (HKW99_15430) coaE 3302086..3302694 (-) 609 WP_407292122.1 dephospho-CoA kinase -
  HKW99_RS15505 (HKW99_15435) pilD 3302888..3303754 (-) 867 WP_407292125.1 prepilin peptidase Machinery gene
  HKW99_RS15510 (HKW99_15440) pilC 3303757..3304974 (-) 1218 WP_407292128.1 type II secretion system F family protein Machinery gene
  HKW99_RS15515 (HKW99_15445) pilB 3304976..3306679 (-) 1704 WP_407292131.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HKW99_RS15520 (HKW99_15450) pilE 3306906..3307442 (+) 537 WP_407292133.1 pilin Machinery gene
  HKW99_RS15525 (HKW99_15455) tfpZ 3307573..3308304 (+) 732 WP_407292134.1 TfpX/TfpZ family type IV pilin accessory protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43924.58 Da        Isoelectric Point: 9.9377

>NTDB_id=442606 HKW99_RS15510 WP_407292128.1 3303757..3304974(-) (pilC) [Stutzerimonas zhaodongensis strain JZ60]
MAQKAIKTSVFTWEGTNRQGAKIKGELSGVSPALVKAQLRKQGVNPQKVRKKSASLFSAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDDLKQDVASGNSFASALRKQPKYFDDLYCNLVDSGEQSGSLETLLDRVATYKEKT
EALKAKIKKAMNYPIAVILVAIIVSAILLIKVVPQFQDVFANFGAELPAFTVFVIGISEALQAWWHLVLLGMFGAAYGFK
TAHSKSEGFRNWFDRLLLKMPIVGDILYKSAVARFARTLATTFAAGVPLVDALDSVAGATGNVVFRNATMKVKSDVSSGM
QLNFSMRTTGTFPSMAIQMAAIGEESGSLDQMLAKVATFYEDEVDNMVDGLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGAVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=442606 HKW99_RS15510 WP_407292128.1 3303757..3304974(-) (pilC) [Stutzerimonas zhaodongensis strain JZ60]
ATGGCGCAGAAAGCGATTAAAACCAGTGTCTTCACCTGGGAAGGGACGAACAGGCAGGGCGCGAAGATCAAAGGCGAGCT
GAGCGGTGTCAGCCCAGCGTTGGTCAAGGCGCAGCTCCGTAAGCAGGGTGTCAATCCGCAAAAAGTGCGCAAGAAGTCGG
CGTCGCTGTTCAGTGCCGGCAAGAAGATCAAGCCGATGGACATCGCCTTGTTTACCCGGCAGATGGCAACCATGATGAAG
GCTGGCGTTCCGCTGTTACAGTCGTTCGACATCATTGGCGAGGGTTTCGATAATCCGAATATGCGCAAGTTGGTGGACGA
CCTGAAGCAGGACGTTGCCTCGGGTAACAGCTTCGCCAGCGCGTTGCGCAAGCAGCCCAAATACTTCGATGATTTGTATT
GCAACTTGGTTGATTCAGGAGAACAGTCCGGCTCGCTGGAGACCTTGCTGGATCGTGTCGCGACCTATAAGGAAAAGACT
GAGGCACTCAAAGCGAAGATCAAAAAGGCGATGAACTACCCTATCGCCGTCATACTCGTAGCGATCATCGTATCGGCAAT
CCTGTTGATCAAGGTTGTCCCTCAGTTCCAAGACGTTTTTGCCAACTTCGGTGCCGAGCTGCCAGCATTCACCGTGTTTG
TGATCGGCATTTCAGAAGCTCTGCAAGCCTGGTGGCATCTGGTTTTGCTTGGGATGTTCGGGGCCGCTTATGGCTTTAAA
ACTGCCCACAGCAAATCCGAGGGTTTCCGCAACTGGTTTGACCGGCTCCTGCTCAAGATGCCGATTGTCGGTGACATCCT
CTACAAATCGGCGGTGGCTCGTTTCGCACGGACCCTGGCAACGACCTTCGCCGCGGGTGTGCCGCTGGTGGACGCGTTGG
ACTCCGTGGCAGGTGCCACAGGTAACGTGGTATTCCGTAATGCGACGATGAAGGTGAAAAGTGACGTCTCCAGCGGTATG
CAGCTGAATTTTTCCATGCGCACGACCGGCACATTTCCGAGCATGGCTATCCAAATGGCGGCCATCGGTGAGGAGTCGGG
CTCGCTGGATCAGATGCTTGCAAAGGTCGCGACCTTTTATGAGGACGAAGTGGACAATATGGTCGACGGCTTAACCGCAC
TGATGGAGCCCATGATCATGGCTGTGTTAGGTGTGCTGGTTGGCGGTTTGATCATTGCCATGTACCTCCCGATCTTCCAG
TTGGGGGCCGTGGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

89.877

100

0.899
  pilC Acinetobacter baylyi ADP1

59.36

100

0.595
  pilC Acinetobacter baumannii D1279779

58.765

100

0.588
  pilC Legionella pneumophila strain ERS1305867

53.03

97.778

0.519
  pilG Neisseria gonorrhoeae MS11

46.402

99.506

0.462
  pilG Neisseria meningitidis 44/76-A

45.522

99.259

0.452
  pilC Vibrio cholerae strain A1552

42.424

97.778

0.415
  pilC Vibrio campbellii strain DS40M4

40.404

97.778

0.395
  pilC Thermus thermophilus HB27

37.157

99.012

0.368