Detailed information NTG0442607

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: IUD19_RS03800
• Genome accession: NZ_CP064326
• Coordinates: 866860..868227 (+)
• Length: 455 a.a.
• NCBI ID: WP_004083742.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. multiplex strain Riv5
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 861860..873227

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IUD19_RS03790 (IUD19_03790)	-	863629..865539 (+)	1911	WP_004083744.1	DUF3857 domain-containing transglutaminase family protein	-
IUD19_RS03795 (IUD19_03795)	lolA	866102..866728 (+)	627	WP_049756311.1	outer membrane lipoprotein chaperone LolA	-
IUD19_RS03800 (IUD19_03800)	rarA	866860..868227 (+)	1368	WP_004083742.1	replication-associated recombination protein A	Machinery gene
IUD19_RS03805 (IUD19_03805)	crcB	868388..868789 (+)	402	WP_004083741.1	fluoride efflux transporter CrcB	-
IUD19_RS03810 (IUD19_03810)	-	869465..870961 (+)	1497	WP_128283905.1	ATP-binding protein	-
IUD19_RS03815 (IUD19_03815)	folK	871087..871602 (+)	516	WP_031345731.1	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	-
IUD19_RS03820 (IUD19_03820)	-	871613..872350 (-)	738	WP_004083738.1	pteridine reductase	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 50836.08 Da
• Isoelectric Point: 6.5799

>NTDB_id=442607 IUD19_RS03800 WP_004083742.1 866860..868227(+) (rarA) [Xylella fastidiosa subsp. multiplex strain Riv5]
MTRQRFPTLQHDLLGVVPLLQPLAERMRPRTLHEMVGQKRLLAPDRALHRAVASGNVHSMILWGPPGCGKTTLSLLLAHY
IDAEFRAVSAVLSGLPEVRQILAEAAQRFSEGRRTVLFVDEVHRFNKMQQDAFLPHIERGSIIFVGATTENPSFELNSAL
LSRCRVHVLEAVSSQDIVVALQRALQDTERGLGGQKIEVSEASLLEIAKAADGDVRRALTLLEIAAELAQDEDEQITADL
LSQVLADRSRRFDKRGEQFYDQISALHKSVRSSNPDAALYWLLRMLDGGCDPIYLARRLTRMAIEDIGLADPRAQSMALE
AWDIYERLGSPEGDLAFAQLVLYLASTAKSNAGYVAFNVAKEDIRQTGTQDVPLHLRNAPTRLMKSLGYGIEYQYDHDAE
NGVALEQTCFPDALGERIYYQPVSRGLEIKLKEKLDWLRAARAQIQADKPQRPRA

Nucleotide

• Length: 1368 bp

>NTDB_id=442607 IUD19_RS03800 WP_004083742.1 866860..868227(+) (rarA) [Xylella fastidiosa subsp. multiplex strain Riv5]
GTGACACGACAGCGCTTTCCGACTCTTCAGCATGATTTGCTTGGTGTGGTTCCTCTCTTGCAGCCACTGGCCGAGCGCAT
GCGTCCTCGTACTCTTCATGAGATGGTAGGACAGAAGCGCTTGCTTGCCCCAGATCGTGCATTGCATCGTGCGGTGGCTT
CCGGGAATGTGCATTCCATGATTTTGTGGGGACCGCCAGGGTGCGGCAAGACGACATTGTCATTGCTGTTAGCGCATTAC
ATTGATGCAGAATTTCGGGCAGTCTCGGCTGTTCTTTCGGGGTTGCCGGAGGTGCGTCAGATCTTGGCTGAGGCTGCGCA
GCGTTTTTCTGAAGGACGCCGCACCGTCTTGTTCGTGGACGAAGTGCATCGTTTTAACAAGATGCAGCAGGATGCGTTTC
TGCCGCATATCGAGCGTGGTTCCATTATTTTCGTTGGTGCCACTACTGAGAATCCATCCTTCGAATTGAACTCGGCGTTA
CTGTCGCGTTGCCGTGTCCACGTGTTGGAGGCAGTGTCGTCACAGGATATCGTTGTGGCATTGCAGCGGGCGTTGCAGGA
TACGGAGCGGGGTTTGGGTGGGCAGAAGATTGAAGTGTCTGAAGCCTCTCTGTTGGAGATTGCCAAGGCTGCAGATGGTG
ACGTGCGTCGTGCGCTCACCTTGTTGGAGATTGCTGCTGAGCTTGCCCAGGATGAGGATGAGCAGATAACCGCTGACTTG
CTTTCGCAAGTGCTTGCCGATCGTAGTCGGCGCTTCGACAAACGGGGGGAGCAGTTCTATGACCAGATTTCGGCCTTGCA
CAAGAGTGTACGTAGTTCCAACCCGGATGCGGCATTGTATTGGTTGCTGCGTATGCTGGATGGTGGTTGTGATCCTATCT
ACTTGGCCCGGCGCTTGACCCGCATGGCGATTGAGGATATCGGTTTGGCTGATCCGCGTGCACAGTCGATGGCTCTGGAG
GCTTGGGACATCTATGAGCGGTTGGGTAGCCCGGAGGGAGATCTGGCGTTCGCGCAGTTGGTGCTGTACTTGGCAAGTAC
AGCAAAATCGAATGCTGGCTATGTTGCGTTCAATGTGGCCAAGGAGGACATTCGCCAGACGGGTACTCAGGATGTTCCGC
TACATCTGCGCAATGCACCGACCAGACTCATGAAAAGTCTCGGTTACGGTATCGAGTATCAGTACGATCATGATGCTGAG
AACGGTGTTGCGCTGGAACAGACTTGTTTTCCCGATGCGCTGGGGGAGCGTATTTACTACCAACCGGTATCCCGCGGTCT
GGAGATTAAGCTGAAGGAGAAGTTGGACTGGTTGCGTGCAGCACGTGCTCAGATTCAAGCGGATAAGCCGCAGCGGCCGC
GTGCATAG

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (273-438)

• AAA C-terminal domain (AAA_assoc_2) (194-271)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (27-146)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	38.771	92.967	0.36