Detailed information NTG0442605

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HKW99_RS15505
• Genome accession: NZ_CP053061
• Coordinates: 3302888..3303754 (-)
• Length: 288 a.a.
• NCBI ID: WP_407292125.1
• Uniprot ID: -
• Organism: Stutzerimonas zhaodongensis strain JZ60
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3297888..3308754

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HKW99_RS15470 (HKW99_15400)	petA	3297953..3298546 (-)	594	WP_407292115.1	ubiquinol-cytochrome c reductase iron-sulfur subunit	-
HKW99_RS15475 (HKW99_15405)	rpsI	3298814..3299206 (-)	393	WP_131649936.1	30S ribosomal protein S9	-
HKW99_RS15480 (HKW99_15410)	rplM	3299221..3299649 (-)	429	WP_019342644.1	50S ribosomal protein L13	-
HKW99_RS15485 (HKW99_15415)	-	3300040..3301077 (+)	1038	WP_407292116.1	NADP(H)-dependent aldo-keto reductase	-
HKW99_RS15490 (HKW99_15420)	-	3301163..3301855 (+)	693	WP_407292118.1	energy-coupling factor ABC transporter permease	-
HKW99_RS15495 (HKW99_15425)	yacG	3301892..3302089 (-)	198	WP_407292121.1	DNA gyrase inhibitor YacG	-
HKW99_RS15500 (HKW99_15430)	coaE	3302086..3302694 (-)	609	WP_407292122.1	dephospho-CoA kinase	-
HKW99_RS15505 (HKW99_15435)	pilD	3302888..3303754 (-)	867	WP_407292125.1	prepilin peptidase	Machinery gene
HKW99_RS15510 (HKW99_15440)	pilC	3303757..3304974 (-)	1218	WP_407292128.1	type II secretion system F family protein	Machinery gene
HKW99_RS15515 (HKW99_15445)	pilB	3304976..3306679 (-)	1704	WP_407292131.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HKW99_RS15520 (HKW99_15450)	pilE	3306906..3307442 (+)	537	WP_407292133.1	pilin	Machinery gene
HKW99_RS15525 (HKW99_15455)	tfpZ	3307573..3308304 (+)	732	WP_407292134.1	TfpX/TfpZ family type IV pilin accessory protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31841.01 Da
• Isoelectric Point: 7.3648

>NTDB_id=442605 HKW99_RS15505 WP_407292125.1 3302888..3303754(-) (pilD) [Stutzerimonas zhaodongensis strain JZ60]
MDVATFLASTPLAFVLCALVLGLLVGSFLNVVIHRMPIMMQRDWRAQAREFLELPAEQTVPFNLVLPHSHCPHCDHQIRA
WENIPLVSWLVLRGKCASCRAPISKRYPFIELLCGVLSGYVALHFGFSWQAGVMLVLTWGLLAMSMIDVDHQLLPDSIVL
PLLWLGLIINVSGLFAPLPDAVWGAVAGYLSLWMVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVGA
VLGTVMLRMQKADSGTTIPFGPYLAIAGWIALLWGDQITSAYLQFARF

Nucleotide

• Length: 867 bp

>NTDB_id=442605 HKW99_RS15505 WP_407292125.1 3302888..3303754(-) (pilD) [Stutzerimonas zhaodongensis strain JZ60]
ATGGATGTTGCTACGTTTTTGGCCAGCACCCCGCTGGCCTTTGTTTTGTGCGCGCTCGTGTTGGGTCTGCTAGTCGGCAG
CTTCCTGAATGTGGTGATCCACCGTATGCCAATTATGATGCAGCGGGACTGGCGCGCTCAGGCGCGTGAGTTTCTTGAAT
TGCCAGCCGAGCAAACAGTGCCTTTCAACCTCGTCCTGCCTCACTCTCATTGCCCGCATTGCGATCATCAGATCCGGGCC
TGGGAAAATATTCCTTTAGTCAGCTGGCTGGTTTTGCGCGGCAAGTGCGCTTCGTGCCGAGCGCCGATTAGCAAGCGCTA
CCCGTTTATCGAGTTGCTCTGTGGAGTGTTGTCTGGCTACGTGGCCTTGCACTTCGGTTTTTCCTGGCAGGCGGGTGTCA
TGCTGGTGCTGACGTGGGGGCTCTTGGCGATGAGCATGATCGATGTCGATCATCAGCTGTTGCCTGATTCCATCGTCTTA
CCGTTGTTATGGCTTGGGTTGATCATCAATGTGTCCGGCCTGTTCGCCCCGTTGCCCGATGCTGTGTGGGGAGCAGTGGC
GGGGTATCTCAGCCTGTGGATGGTGTACTGGCTGTTCAAGCTCGTAACCGGAAAAGAAGGTATGGGCTACGGTGACTTCA
AGTTGCTGGCCATGCTTGGCGCCTGGGGTGGTTGGCAGGTATTGCCGTTGACCATTCTGCTCTCGTCTGTCGTGGGTGCG
GTGTTGGGTACCGTTATGTTGCGTATGCAGAAGGCCGATAGCGGCACGACAATTCCTTTTGGCCCCTATCTGGCAATTGC
GGGCTGGATCGCTCTGCTTTGGGGTGACCAGATCACCTCGGCCTATCTTCAGTTTGCCCGCTTCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (135-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.272	96.875	0.545
pilD	Vibrio campbellii strain DS40M4	53.957	96.528	0.521
pilD	Neisseria gonorrhoeae MS11	53.875	94.097	0.507
pilD	Acinetobacter nosocomialis M2	50.883	98.264	0.5
pilD	Acinetobacter baumannii D1279779	50.53	98.264	0.497