Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DB356_RS04345 Genome accession   NZ_CP053030
Coordinates   959339..960556 (-) Length   405 a.a.
NCBI ID   WP_032613636.1    Uniprot ID   -
Organism   Pseudomonas congelans strain 508     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 954339..965556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DB356_RS04315 (DB356_04610) - 955765..956298 (-) 534 WP_003317783.1 MOSC domain-containing protein -
  DB356_RS04320 (DB356_04615) - 956295..956924 (-) 630 WP_122694368.1 DUF1780 domain-containing protein -
  DB356_RS04325 (DB356_04620) - 957051..957512 (+) 462 WP_010437859.1 hypothetical protein -
  DB356_RS04330 (DB356_04625) yacG 957639..957848 (-) 210 WP_002552020.1 DNA gyrase inhibitor YacG -
  DB356_RS04335 (DB356_04630) coaE 957845..958468 (-) 624 WP_010437862.1 dephospho-CoA kinase -
  DB356_RS04340 (DB356_04635) pilD 958465..959337 (-) 873 WP_122694365.1 A24 family peptidase Machinery gene
  DB356_RS04345 (DB356_04640) pilC 959339..960556 (-) 1218 WP_032613636.1 type II secretion system F family protein Machinery gene
  DB356_RS04350 (DB356_04645) pilB 960559..962253 (-) 1695 WP_214424193.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DB356_RS04355 (DB356_04650) pilA2 962479..962901 (+) 423 WP_214423659.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  DB356_RS04360 (DB356_04655) - 963140..963499 (-) 360 WP_214423660.1 helix-turn-helix domain-containing protein -
  DB356_RS04365 (DB356_04660) gstA 963656..964276 (+) 621 WP_214424194.1 glutathione transferase GstA -
  DB356_RS04370 (DB356_04665) - 964519..965211 (+) 693 WP_348772816.1 DUF433 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44159.21 Da        Isoelectric Point: 10.1956

>NTDB_id=442290 DB356_RS04345 WP_032613636.1 959339..960556(-) (pilC) [Pseudomonas congelans strain 508]
MASKAVKVIVYTWEGVDKKGTKTSGELSGHNLALIKAQLRKQGISPTKVRKKSVSIFGKGKKIKPLDIAFFSRQMATMMK
AGVPLLQSFDIIGEGAENPNMRALVGSLKQEVSAGNSFATALRQKPEYFDDLFCNLVDAGEQAGALESLLDRVASYKEKT
EKLKAKIKKAMTYPIAVLIVAIIVSGILLIKVVPQFQTVFASFGAQLPAFTLMVIGLSDIVQKWWLAIVGLFFVSFFMFK
RAYKQSQKFRDSLDRFLLKVPIIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGATGNVVFKNAVIKVKQDVSTGM
QLNFSMRSTGVFPSLAIQMTAIGEESGALDTMLDKVATYYEDEVDNMVDNLTSLMEPMIMAFLGVIVGGLVIAMYLPIFQ
LGNVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=442290 DB356_RS04345 WP_032613636.1 959339..960556(-) (pilC) [Pseudomonas congelans strain 508]
ATGGCCAGCAAGGCAGTCAAAGTCATCGTTTACACGTGGGAAGGTGTCGACAAAAAAGGTACTAAAACCAGTGGGGAGCT
GAGTGGCCATAACCTGGCACTTATAAAAGCTCAACTGCGCAAGCAAGGTATTAGCCCCACCAAGGTACGCAAAAAATCAG
TTTCGATCTTTGGCAAAGGCAAGAAGATCAAGCCGCTGGATATCGCGTTCTTTTCTCGTCAGATGGCAACGATGATGAAG
GCTGGTGTGCCCCTGCTTCAATCATTCGACATCATCGGTGAGGGCGCTGAAAATCCAAATATGCGTGCGTTGGTAGGATC
GCTAAAGCAAGAGGTTTCCGCAGGTAACAGCTTCGCAACGGCGCTGAGACAAAAACCAGAATATTTCGATGACCTGTTTT
GCAATCTGGTCGATGCTGGCGAGCAAGCTGGCGCACTTGAAAGCCTGCTGGATCGCGTTGCTAGTTACAAGGAAAAAACT
GAAAAGCTAAAAGCTAAAATCAAAAAAGCCATGACATACCCTATTGCTGTGTTGATCGTAGCAATTATTGTGTCAGGAAT
TTTGCTCATCAAGGTAGTGCCACAGTTCCAGACGGTCTTCGCTAGCTTCGGCGCTCAGCTACCTGCATTTACCTTGATGG
TGATTGGTCTATCCGACATCGTGCAGAAATGGTGGTTGGCCATTGTCGGTCTATTTTTCGTTAGTTTTTTTATGTTCAAA
CGTGCTTACAAGCAGTCTCAAAAGTTTCGCGACAGTCTCGACCGCTTTCTTCTGAAAGTGCCCATCATCGGGCCGTTGAT
TTTCAAATCTTCGGTGGCACGTTACGCACGCACACTTGCAACAACGTTTGCCGCTGGCGTCCCGCTTGTGGAGGCTTTGG
ACTCAGTCGCTGGAGCGACTGGCAATGTAGTATTTAAAAATGCAGTCATTAAGGTCAAACAGGACGTCTCCACAGGCATG
CAACTGAATTTTTCGATGCGTTCAACAGGCGTATTTCCGAGCCTGGCGATACAGATGACCGCTATCGGCGAAGAGTCCGG
CGCCTTGGACACCATGCTGGACAAGGTCGCTACCTACTATGAGGACGAAGTCGATAACATGGTCGACAATCTGACCAGCC
TTATGGAACCGATGATCATGGCCTTTTTGGGCGTGATAGTCGGCGGGCTGGTAATCGCGATGTATCTACCTATCTTCCAA
CTCGGAAACGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

73.827

100

0.738
  pilC Acinetobacter baylyi ADP1

60.049

100

0.605
  pilC Acinetobacter baumannii D1279779

59.901

99.753

0.598
  pilC Legionella pneumophila strain ERS1305867

50.739

100

0.509
  pilG Neisseria gonorrhoeae MS11

43.073

98.025

0.422
  pilG Neisseria meningitidis 44/76-A

43.073

98.025

0.422
  pilC Vibrio campbellii strain DS40M4

42.821

98.025

0.42
  pilC Vibrio cholerae strain A1552

41.235

100

0.412
  pilC Thermus thermophilus HB27

39.152

99.012

0.388