Detailed information NTG0442289

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DB356_RS04340
• Genome accession: NZ_CP053030
• Coordinates: 958465..959337 (-)
• Length: 290 a.a.
• NCBI ID: WP_122694365.1
• Uniprot ID: -
• Organism: Pseudomonas congelans strain 508
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 953465..964337

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DB356_RS04310 (DB356_04605)	-	954250..955548 (-)	1299	WP_214423658.1	NAD(P)/FAD-dependent oxidoreductase	-
DB356_RS04315 (DB356_04610)	-	955765..956298 (-)	534	WP_003317783.1	MOSC domain-containing protein	-
DB356_RS04320 (DB356_04615)	-	956295..956924 (-)	630	WP_122694368.1	DUF1780 domain-containing protein	-
DB356_RS04325 (DB356_04620)	-	957051..957512 (+)	462	WP_010437859.1	hypothetical protein	-
DB356_RS04330 (DB356_04625)	yacG	957639..957848 (-)	210	WP_002552020.1	DNA gyrase inhibitor YacG	-
DB356_RS04335 (DB356_04630)	coaE	957845..958468 (-)	624	WP_010437862.1	dephospho-CoA kinase	-
DB356_RS04340 (DB356_04635)	pilD	958465..959337 (-)	873	WP_122694365.1	A24 family peptidase	Machinery gene
DB356_RS04345 (DB356_04640)	pilC	959339..960556 (-)	1218	WP_032613636.1	type II secretion system F family protein	Machinery gene
DB356_RS04350 (DB356_04645)	pilB	960559..962253 (-)	1695	WP_214424193.1	type IV-A pilus assembly ATPase PilB	Machinery gene
DB356_RS04355 (DB356_04650)	pilA2	962479..962901 (+)	423	WP_214423659.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
DB356_RS04360 (DB356_04655)	-	963140..963499 (-)	360	WP_214423660.1	helix-turn-helix domain-containing protein	-
DB356_RS04365 (DB356_04660)	gstA	963656..964276 (+)	621	WP_214424194.1	glutathione transferase GstA	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32043.20 Da
• Isoelectric Point: 8.3734

>NTDB_id=442289 DB356_RS04340 WP_122694365.1 958465..959337(-) (pilD) [Pseudomonas congelans strain 508]
MPLLDFLASSPLAFVTTCCILGLIIGSFLNVVVYRLPIMMERDWKAQSRELLGLPAEPDQPVFNLNRPRSSCPHCAHKIR
PWENLPVISYLLLRGKCSQCKAPISKRYPLVELTCAVLSAYVAWHFGFGWQAAAMLVLSWGLLAMSLIDADHQLLPDSLV
LPLLWLGLIVNAFGLFTSLNDALWGAVAGYLALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVIMMRVRRVESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=442289 DB356_RS04340 WP_122694365.1 958465..959337(-) (pilD) [Pseudomonas congelans strain 508]
ATGCCCCTCCTCGATTTCCTGGCCAGCTCCCCCCTGGCCTTCGTCACCACCTGCTGCATTCTCGGCCTGATCATCGGAAG
TTTCCTCAACGTGGTCGTTTACCGCCTCCCGATAATGATGGAGCGCGACTGGAAAGCCCAATCCCGAGAACTGCTCGGCC
TGCCCGCCGAACCCGATCAACCCGTGTTCAACCTGAACCGCCCCCGTTCCAGTTGCCCGCATTGCGCGCACAAAATCCGC
CCGTGGGAGAACCTGCCGGTGATCAGCTATCTGCTGCTGCGCGGTAAATGTTCGCAGTGCAAAGCGCCGATCAGCAAACG
CTACCCGCTGGTCGAGCTGACCTGCGCAGTGCTGTCGGCCTACGTGGCCTGGCATTTCGGTTTCGGCTGGCAGGCGGCGG
CGATGCTGGTACTGAGCTGGGGGCTGCTGGCGATGAGTCTGATCGATGCCGATCACCAACTGTTACCTGATTCTCTGGTG
CTGCCACTGCTGTGGCTGGGCCTGATCGTCAACGCTTTCGGGCTGTTTACGTCGCTGAACGACGCGCTATGGGGAGCGGT
GGCCGGCTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGTTATGGCGACT
TCAAGTTGCTGGCAATGCTTGGCGCGTGGGGCGGCTGGCAGATTTTGCCGTTGACCATCCTGCTATCGTCGCTGGTGGGC
GCGGTGCTTGGGGTGATCATGATGCGTGTGCGCAGGGTAGAAAGCGGTACGCCGATCCCCTTTGGTCCTTATCTGGCCAT
TGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCTTACATGCAGTTTGCCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.348	95.172	0.517
pilD	Vibrio campbellii strain DS40M4	52.297	97.586	0.51
pilD	Acinetobacter baumannii D1279779	50.704	97.931	0.497
pilD	Acinetobacter nosocomialis M2	50	97.931	0.49
pilD	Neisseria gonorrhoeae MS11	51.119	92.414	0.472