Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   DB356_RS03545 Genome accession   NZ_CP053030
Coordinates   805444..806781 (-) Length   445 a.a.
NCBI ID   WP_214423634.1    Uniprot ID   -
Organism   Pseudomonas congelans strain 508     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 800444..811781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DB356_RS03530 (DB356_03810) - 800577..803773 (+) 3197 Protein_702 PilC/PilY family type IV pilus protein -
  DB356_RS03535 (DB356_03815) - 803785..804186 (+) 402 WP_214423632.1 type IV pilin protein -
  DB356_RS03540 (DB356_03820) thiO 804212..805315 (+) 1104 WP_214423633.1 glycine oxidase ThiO -
  DB356_RS03545 (DB356_03830) pilR 805444..806781 (-) 1338 WP_214423634.1 sigma-54 dependent transcriptional regulator Regulator
  DB356_RS03550 (DB356_03835) pilS 806784..808376 (-) 1593 WP_096140771.1 ATP-binding protein Regulator
  DB356_RS03555 (DB356_03840) - 808366..808605 (-) 240 WP_122589370.1 PP0621 family protein -
  DB356_RS03560 (DB356_03845) - 808725..809747 (-) 1023 WP_010427430.1 outer membrane protein assembly factor BamD -
  DB356_RS03565 (DB356_03850) rluD 809897..810859 (+) 963 WP_010427432.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DB356_RS03570 (DB356_03855) pgeF 810856..811584 (+) 729 WP_010427433.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49747.76 Da        Isoelectric Point: 6.5100

>NTDB_id=442287 DB356_RS03545 WP_214423634.1 805444..806781(-) (pilR) [Pseudomonas congelans strain 508]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNVDTAINALKAGAFDFVTKPVDLGRLRELVKSALSLPGAPPTRSIDNRLLGDSLAMRTLRNQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGSRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGGQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPPLRERREDIDQLAASV
LKRLAGNGAQPVARLNAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLTESASPQEHDGPSLADIDNLED
YLESIERQLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=442287 DB356_RS03545 WP_214423634.1 805444..806781(-) (pilR) [Pseudomonas congelans strain 508]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGACGAGCCGGATATTCGCGAACTCCTGGAGATCACGCTGGGGCGCAT
GAAACTCGACACGCGCAGCGCCCGTAACGTTGCCGAAGCGCACGACTGGCTGGCCCGCGAACCGTTCGACATGTGCCTGA
CCGACATGCGTCTGCCTGACGGTAATGGCCTTGAGCTGGTGCAACACATACAGCACGGCTACCCCCACGTACCGGTGGCG
ATGATCACTGCCCACGGCAATGTGGATACCGCGATCAACGCGCTGAAGGCCGGGGCTTTCGATTTTGTGACCAAGCCGGT
CGACCTCGGCAGGTTGCGCGAACTGGTCAAGAGCGCGCTGAGCCTGCCCGGCGCACCACCCACGCGCAGCATCGACAACC
GCCTGCTGGGTGACTCGCTGGCGATGCGTACCTTGCGCAATCAGATCGGCAAGCTGGCTCGCAGTCAGGCGCCGATCTAC
ATCAGCGGCGAGTCGGGCAGCGGCAAGGAGCTTGTAGCGCGGCTGATCCACGAGCAGGGCTCGCGCATCGACAAACCTTT
CATACCGGTGAATTGCGGTGCCATCCCTTCCGAACTCATGGAAAGTGAATTCTTCGGCCATCGTAAAGGCAGTTTCAGCG
GTGCCCACGAAGACAAGCCCGGTCTGTTTCAGGCGGCGCATACCGGCACGCTGTTTCTCGATGAGGTCGCCGACCTGCCA
CTGGCCATGCAGGTCAAACTCCTGCGCGCCATCCAGGAAAAATCCATCCGCAGCGTCGGCGGCCAGCAAGAGCAGATCGT
CGACGTGCGCATTCTGTGCGCCACTCACAAGAATCTGAATGCAGAGGTCGCGGCCGGTCGGTTCAGGCAGGATCTGTATT
ACCGATTGAACGTGATCGAAGTACGCGTGCCCCCGTTGCGCGAGCGGCGTGAGGATATCGACCAACTGGCAGCCAGTGTT
CTCAAGCGGCTTGCCGGGAACGGCGCACAACCCGTCGCGCGCCTGAACGCGCAGGCGCTGGAAACGCTGAAGAGCTATCG
ATTTCCCGGTAACGTGCGCGAGCTGGAAAACATGCTGGAGCGCGCCTACACGCTGTGTGAGAACGACGAAATCCACGCCA
GCGACCTGCGCCTGACCGAGTCTGCCAGCCCTCAGGAGCACGACGGCCCGAGCCTGGCCGACATCGACAACCTTGAAGAC
TATCTGGAAAGCATCGAACGCCAGCTCATCCTGCAGGCACTGGAAGAAACCCGCTGGAACCGCACCGCTGCAGCAGAAAG
GCTCAGCTTGTCGTTCAGGTCACTGCGCTACCGACTGAAGAAGCTGGGTCTGGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Response regulator receiver domain (Response_reg)

(7-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

77.427

99.551

0.771
  pilR Acinetobacter baumannii strain A118

49.036

100

0.515
  luxO Vibrio cholerae strain A1552

37.613

99.775

0.375