Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   DB356_RS03550 Genome accession   NZ_CP053030
Coordinates   806784..808376 (-) Length   530 a.a.
NCBI ID   WP_096140771.1    Uniprot ID   -
Organism   Pseudomonas congelans strain 508     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 801784..813376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DB356_RS03535 (DB356_03815) - 803785..804186 (+) 402 WP_214423632.1 type IV pilin protein -
  DB356_RS03540 (DB356_03820) thiO 804212..805315 (+) 1104 WP_214423633.1 glycine oxidase ThiO -
  DB356_RS03545 (DB356_03830) pilR 805444..806781 (-) 1338 WP_214423634.1 sigma-54 dependent transcriptional regulator Regulator
  DB356_RS03550 (DB356_03835) pilS 806784..808376 (-) 1593 WP_096140771.1 ATP-binding protein Regulator
  DB356_RS03555 (DB356_03840) - 808366..808605 (-) 240 WP_122589370.1 PP0621 family protein -
  DB356_RS03560 (DB356_03845) - 808725..809747 (-) 1023 WP_010427430.1 outer membrane protein assembly factor BamD -
  DB356_RS03565 (DB356_03850) rluD 809897..810859 (+) 963 WP_010427432.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DB356_RS03570 (DB356_03855) pgeF 810856..811584 (+) 729 WP_010427433.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58006.96 Da        Isoelectric Point: 7.1276

>NTDB_id=442288 DB356_RS03550 WP_096140771.1 806784..808376(-) (pilS) [Pseudomonas congelans strain 508]
MTADSPSLVSPQAQRILRLYHLYRLTIGIVLVLLISSSLETELLQLANQNLFRSGCWLYLVFNILVVVLLERPSRQAQFF
GLAMTDAIMLSALFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARMQVSEVLAEQRAADVDSLETLNALILQRMRTGILVLDANHQVLLANQGALNLLGQEQLVGQIID
ACSPQLVERLRQWLVNPIMVPRSITTAPVGLVLQPSFATLNRGDQRQTLIFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELSAADRRLGQIIHEQSGRIDRVIENVLQLSRRREAQPELLDLKTWLEHFVAEFRSSAAPN
QAIHVDISPGTLTTRMDSGQLTQIMTNLLQNGLRYSGKNHPSAQVWLKLHNDQRSDLPTLEVLDDGPGVSKQHLSKMFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYAPRPTGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=442288 DB356_RS03550 WP_096140771.1 806784..808376(-) (pilS) [Pseudomonas congelans strain 508]
GTGACCGCTGACTCACCATCCCTTGTCAGCCCGCAGGCGCAGCGGATTCTGCGGCTGTACCATCTCTATCGACTGACCAT
CGGCATCGTACTGGTCCTGTTGATTTCCAGCAGCCTGGAAACCGAACTGCTGCAACTGGCCAACCAGAACCTGTTCCGCT
CGGGCTGCTGGTTGTATCTGGTGTTCAACATTCTGGTCGTCGTGCTGCTGGAGCGCCCCAGCCGTCAGGCACAGTTTTTC
GGCCTGGCGATGACCGACGCTATCATGCTGTCCGCGCTGTTCTACGCAGCGGGCGGCCCTTCCAGCGGTATCGGCAACCT
GTTGATTGCCTCGGTGGCGATCAGCAACGTGTTGCTGCGCGGCCGTATCGGTCTGCTGATCGCTGCGGTTTCGGCCATCG
GCATCATCTACCTGACGTTCTATATCAGCTTCGGTACACCCTCGGTTTCCAACGACTACGTGCAGGCTGGCTCGCTGGGC
GCCTTATGCTTCGCCGCTGCCCTGCTGGTGCAGGCGCTGACAGCGCGCATGCAGGTCAGCGAGGTACTGGCCGAACAGCG
CGCGGCGGATGTCGACAGCCTTGAAACGCTCAACGCGCTGATCCTGCAACGCATGCGTACCGGCATTCTGGTACTGGATG
CCAACCATCAGGTGCTGCTGGCCAATCAGGGTGCCTTGAACCTGCTGGGCCAGGAACAGCTGGTCGGCCAGATCATCGAC
GCCTGCTCGCCACAACTGGTCGAACGCCTGCGTCAGTGGCTCGTCAACCCGATCATGGTGCCGCGCAGCATCACCACCGC
CCCCGTCGGGCTGGTGCTGCAACCGAGCTTTGCCACGCTCAACCGGGGCGATCAGCGTCAGACACTGATTTTTCTCGAAG
ACCTGTCGCAGATTGCCCACCAGGCGCAGCAGCTCAAGCTCGCCGCACTGGGACGCCTGACCGCCGGGATTGCCCATGAG
ATACGCAACCCGCTGGGCGCCGTCAGCCATGCGGCGCAGTTGCTTAATGAATCGGAAGAGCTCAGTGCGGCGGATCGACG
CCTGGGGCAGATCATTCATGAGCAGTCGGGACGCATTGACCGGGTCATCGAAAATGTCCTGCAGTTGTCGCGCAGACGCG
AAGCGCAACCCGAACTGCTTGATCTGAAAACCTGGCTGGAACACTTTGTCGCTGAATTTCGCAGTTCCGCTGCGCCCAAT
CAGGCGATTCATGTCGACATCAGCCCCGGCACGCTGACAACTCGCATGGATTCCGGACAGCTGACGCAAATCATGACCAA
CCTGCTGCAGAACGGCCTGCGCTACAGCGGCAAAAATCATCCGTCAGCGCAGGTCTGGCTGAAACTGCACAACGACCAGA
GGAGCGATTTGCCTACGCTGGAAGTGCTGGACGACGGGCCGGGGGTCAGCAAGCAACACCTGAGCAAGATGTTCGAACCG
TTTTTCACCACAGAAAGCAAAGGCACCGGCCTTGGTCTATATCTGTCACGTGAACTGTGCGAAAGCAATCAAGCGCACCT
GGAATATGCGCCCCGCCCCACAGGTGGCAGTTGCCTGCGCATTACCTTCGCCCACCCGTTCAAGACGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.829

100

0.609