Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   HG563_RS00215 Genome accession   NZ_CP051504
Coordinates   37334..38470 (+) Length   378 a.a.
NCBI ID   WP_202273431.1    Uniprot ID   -
Organism   Helicobacter pylori strain SHIM-011     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 32334..43470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG563_RS00180 (HG563_00180) panD 32783..33133 (+) 351 WP_000142296.1 aspartate 1-decarboxylase -
  HG563_RS00185 (HG563_00185) - 33144..33446 (+) 303 WP_000347918.1 YbaB/EbfC family nucleoid-associated protein -
  HG563_RS00190 (HG563_00190) - 33446..34453 (+) 1008 WP_000468454.1 PDZ domain-containing protein -
  HG563_RS00195 (HG563_00195) comB6 34461..35516 (+) 1056 WP_202273666.1 P-type conjugative transfer protein TrbL Machinery gene
  HG563_RS00200 (HG563_00200) comB7 35532..35645 (+) 114 WP_001218100.1 hypothetical protein Machinery gene
  HG563_RS00205 (HG563_00205) comB8 35642..36385 (+) 744 WP_000660502.1 virB8 family protein Machinery gene
  HG563_RS00210 (HG563_00210) comB9 36385..37341 (+) 957 WP_014662053.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HG563_RS00215 (HG563_00215) comB10 37334..38470 (+) 1137 WP_202273431.1 DNA type IV secretion system protein ComB10 Machinery gene
  HG563_RS00220 (HG563_00220) - 38541..39953 (+) 1413 WP_000694833.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HG563_RS00225 (HG563_00225) gmd 39981..41126 (+) 1146 WP_000659858.1 GDP-mannose 4,6-dehydratase -
  HG563_RS00230 (HG563_00230) - 41119..42051 (+) 933 WP_001002427.1 GDP-L-fucose synthase -
  HG563_RS00235 (HG563_00235) hypE 42336..43334 (-) 999 WP_000378800.1 hydrogenase expression/formation protein HypE -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42229.90 Da        Isoelectric Point: 9.9555

>NTDB_id=439263 HG563_RS00215 WP_202273431.1 37334..38470(+) (comB10) [Helicobacter pylori strain SHIM-011]
MNKWLKGALVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKNPPIDLKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEYATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=439263 HG563_RS00215 WP_202273431.1 37334..38470(+) (comB10) [Helicobacter pylori strain SHIM-011]
ATGAATAAGTGGCTTAAGGGGGCACTTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATTAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAACCCTCCCATAGATTTAAAAAC
AAACACAACCCCTCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTGGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTATGAAGAAAACCTGATTTTCCCTATGGATAACCCTAAAGGCATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAATATGCGACTAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAAGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCAAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTAA

Domains

Predicted by InterproScan.

Bacterial conjugation TrbI-like protein (TrbI)

(173-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

96.032

100

0.96