Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   HC660_RS18375 Genome accession   NZ_CP051464
Coordinates   3533455..3533796 (-) Length   113 a.a.
NCBI ID   WP_010332166.1    Uniprot ID   A0AAP3CTJ2
Organism   Bacillus mojavensis strain UCMB5075     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3528455..3538796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC660_RS18360 (HC660_35220) - 3528692..3531466 (+) 2775 WP_010332163.1 DEAD/DEAH box helicase -
  HC660_RS18365 (HC660_35230) - 3531589..3532446 (-) 858 WP_168748937.1 Cof-type HAD-IIB family hydrolase -
  HC660_RS18370 (HC660_35240) - 3532452..3533228 (-) 777 WP_168748938.1 DeoR/GlpR family DNA-binding transcription regulator -
  HC660_RS18375 (HC660_35250) ssbB 3533455..3533796 (-) 342 WP_010332166.1 single-stranded DNA-binding protein SsbB Machinery gene
  HC660_RS18380 (HC660_35260) - 3533874..3534257 (-) 384 WP_010332167.1 hypothetical protein -
  HC660_RS18385 (HC660_35270) - 3534431..3534841 (+) 411 WP_010332168.1 YwpF-like family protein -
  HC660_RS18390 (HC660_35280) blaOXA 3534895..3535698 (+) 804 WP_168748939.1 class D beta-lactamase -
  HC660_RS18395 (HC660_35290) - 3535780..3536439 (-) 660 WP_168748940.1 class A sortase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12552.29 Da        Isoelectric Point: 8.4667

>NTDB_id=438518 HC660_RS18375 WP_010332166.1 3533455..3533796(-) (ssbB) [Bacillus mojavensis strain UCMB5075]
MFNQVMLVGRLTKDPELRYTSAGAAVTHITIAVNRSFKNASGDIEADYVNCTLWRKTAENTALYCQKGSLVGLSGRIQTR
SYENAEGVKVYVTEVMADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=438518 HC660_RS18375 WP_010332166.1 3533455..3533796(-) (ssbB) [Bacillus mojavensis strain UCMB5075]
ATGTTCAATCAGGTCATGCTTGTCGGACGGTTAACAAAAGACCCTGAGCTTCGATACACTTCCGCAGGCGCGGCAGTCAC
ACACATTACGATCGCGGTTAACCGAAGCTTCAAAAATGCTTCGGGGGATATTGAAGCGGATTACGTCAATTGCACGCTTT
GGAGAAAAACGGCCGAAAACACGGCGTTATATTGCCAAAAAGGCTCTCTCGTCGGCCTAAGCGGAAGGATTCAGACAAGG
AGCTATGAAAATGCGGAAGGTGTCAAAGTATATGTAACTGAAGTGATGGCTGACACTGTTCGTTTTATGGATCCTAAACC
TCGGGAAAAAGCTGCCGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

92.035

100

0.92
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.321

93.805

0.575
  ssb Latilactobacillus sakei subsp. sakei 23K

58.491

93.805

0.549
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.296

95.575

0.442
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.593

95.575

0.407
  ssbB/cilA Streptococcus mitis NCTC 12261

42.593

95.575

0.407
  ssbA Streptococcus mutans UA159

43.396

93.805

0.407
  ssbB/cilA Streptococcus pneumoniae Rx1

41.667

95.575

0.398
  ssbB/cilA Streptococcus pneumoniae D39

41.667

95.575

0.398
  ssbB/cilA Streptococcus pneumoniae R6

41.667

95.575

0.398
  ssbB/cilA Streptococcus mitis SK321

41.667

95.575

0.398
  ssbB Lactococcus lactis subsp. cremoris KW2

39.048

92.92

0.363