Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   HF500_RS00525 Genome accession   NZ_CP051162
Coordinates   113296..113655 (-) Length   119 a.a.
NCBI ID   WP_172796417.1    Uniprot ID   -
Organism   Geobacillus subterraneus strain CPW16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 108296..118655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF500_RS00505 (HF500_00505) wecB 108507..109652 (-) 1146 WP_168367855.1 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) -
  HF500_RS00510 (HF500_00510) - 110443..111822 (-) 1380 WP_168367856.1 peptidoglycan-binding protein -
  HF500_RS00515 (HF500_00515) - 112041..112538 (-) 498 WP_082816505.1 hypothetical protein -
  HF500_RS00520 (HF500_00520) - 112754..113164 (+) 411 WP_063164693.1 helix-turn-helix transcriptional regulator -
  HF500_RS00525 (HF500_00525) ssbB 113296..113655 (-) 360 WP_172796417.1 single-stranded DNA-binding protein Machinery gene
  HF500_RS00530 (HF500_00530) - 113927..114367 (+) 441 WP_063164692.1 YwpF-like family protein -
  HF500_RS00535 (HF500_00535) - 114482..115099 (-) 618 WP_225995596.1 class D sortase -
  HF500_RS00540 (HF500_00540) - 115177..116145 (-) 969 WP_168367857.1 processed acidic surface protein -
  HF500_RS00545 (HF500_00545) - 116257..117633 (-) 1377 WP_063164689.1 aspartate kinase -
  HF500_RS00550 (HF500_00550) - 117784..118218 (-) 435 WP_063164688.1 DUF1284 domain-containing protein -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13408.24 Da        Isoelectric Point: 9.5562

>NTDB_id=436386 HF500_RS00525 WP_172796417.1 113296..113655(-) (ssbB) [Geobacillus subterraneus strain CPW16]
MQRNMINQVVLVGRLTKDPELRYTAEGAAVTTVTLAVARNFRNAEGGVDADFIPCVLWRKTAEHTANYCRKGSMVAVTGR
IQTRRYDNKDGQRVYVTEVVADSVQFLHSGKAREWPEHV

Nucleotide


Download         Length: 360 bp        

>NTDB_id=436386 HF500_RS00525 WP_172796417.1 113296..113655(-) (ssbB) [Geobacillus subterraneus strain CPW16]
ATGCAACGGAACATGATCAATCAAGTCGTACTTGTCGGCCGGTTGACGAAGGACCCGGAGCTTCGCTACACGGCCGAGGG
GGCGGCCGTGACAACCGTTACGCTGGCGGTAGCGAGAAATTTTCGCAATGCGGAAGGGGGGGTTGATGCCGATTTCATTC
CGTGTGTTTTATGGCGGAAAACGGCGGAACATACCGCCAATTACTGCCGAAAAGGATCAATGGTGGCGGTAACGGGAAGA
ATTCAGACGCGCCGCTATGACAATAAAGATGGCCAGCGCGTCTATGTGACCGAAGTCGTCGCCGATTCCGTTCAGTTTCT
CCACTCCGGCAAAGCGCGGGAATGGCCGGAGCATGTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.455

92.437

0.605
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.385

87.395

0.571
  ssb Latilactobacillus sakei subsp. sakei 23K

62.857

88.235

0.555
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.491

95.798

0.445
  ssbA Streptococcus mutans UA159

43.86

95.798

0.42
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.982

95.798

0.412
  ssbB/cilA Streptococcus mitis NCTC 12261

42.982

95.798

0.412
  ssbB/cilA Streptococcus pneumoniae Rx1

42.105

95.798

0.403
  ssbB/cilA Streptococcus mitis SK321

42.105

95.798

0.403
  ssbB/cilA Streptococcus pneumoniae D39

42.105

95.798

0.403
  ssbB/cilA Streptococcus pneumoniae R6

42.105

95.798

0.403
  ssbB Lactococcus lactis subsp. cremoris KW2

43.269

87.395

0.378