Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IL983_RS25335 Genome accession   NZ_CP063047
Coordinates   5515954..5517042 (+) Length   362 a.a.
NCBI ID   WP_034035846.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain KC-Tt-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 5510954..5522042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL983_RS25315 (IL983_25315) rsmB 5511849..5513153 (-) 1305 WP_034035845.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  IL983_RS25320 (IL983_25320) fmt 5513150..5514094 (-) 945 WP_009316076.1 methionyl-tRNA formyltransferase -
  IL983_RS25325 (IL983_25325) def 5514149..5514655 (-) 507 WP_003097293.1 peptide deformylase -
  IL983_RS25330 (IL983_25330) tsaP 5514794..5515819 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  IL983_RS25335 (IL983_25335) dprA 5515954..5517042 (+) 1089 WP_034035846.1 DNA-processing protein DprA Machinery gene
  IL983_RS25340 (IL983_25340) - 5517083..5517640 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  IL983_RS25345 (IL983_25345) - 5517650..5518627 (-) 978 WP_003111202.1 NADPH:quinone reductase -
  IL983_RS25350 (IL983_25350) hemF 5518818..5519735 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  IL983_RS25355 (IL983_25355) aroE 5519793..5520617 (+) 825 WP_003097314.1 shikimate dehydrogenase -
  IL983_RS25360 (IL983_25360) - 5520728..5521714 (+) 987 WP_003097316.1 phospholipase -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37741.29 Da        Isoelectric Point: 7.0741

>NTDB_id=436281 IL983_RS25335 WP_034035846.1 5515954..5517042(+) (dprA) [Pseudomonas aeruginosa strain KC-Tt-1]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPAGAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGPR
RHLLMWDDPGYPALLAEVADAPPLLYVEGTPEPLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALDVGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPVQPLPHPLLALLRAAP
YTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=436281 IL983_RS25335 WP_034035846.1 5515954..5517042(+) (dprA) [Pseudomonas aeruginosa strain KC-Tt-1]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGCGCCTGGCGCACCCTGGGAGTGCCTG
CCGAGGCCGCCGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC
AGGCACCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCACCCCGGAGCCTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCC
GCCCACGAGGGCGCGCTGGACGTTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGCCG
CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAGCTGCCGCTGGACAGCCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGGCGCGAGGTGTACGCCATCCCGGGCTCCATCCACCATCCCGG
CGCACGTGGCTGCCACCAGCTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGTGCAGCCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC
TACACCAGTGAAGGCCTGGCCGCCGCCAGCGGCATGACGCTGCCCGACGTGCTGGCGACGCTCAGCGAACTGGAACTCGA
CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)

DprA winged helix domain (WHD_DprA)

(297-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

43.514

100

0.445
  dprA Vibrio cholerae strain A1552

42.781

100

0.442
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

42.781

100

0.442
  dprA Legionella pneumophila strain ERS1305867

43.099

98.066

0.423
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.39

99.171

0.401
  dprA Acinetobacter baumannii D1279779

37.569

100

0.376
  dprA Acinetobacter baumannii strain A118

38.177

96.961

0.37
  dprA Glaesserella parasuis strain SC1401

46.853

79.006

0.37
  dprA Neisseria gonorrhoeae strain FA1090

43.894

83.702

0.367
  dprA Neisseria meningitidis MC58

45.704

80.387

0.367
  dprA Neisseria meningitidis strain C311

45.704

80.387

0.367
  dprA Neisseria gonorrhoeae MS11

43.564

83.702

0.365