Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   GM240_RS01190 Genome accession   NZ_CP050509
Coordinates   234678..235040 (+) Length   120 a.a.
NCBI ID   WP_053348513.1    Uniprot ID   -
Organism   Peribacillus butanolivorans strain KJ40     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 229678..240040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GM240_RS01160 (GM240_01165) - 230403..231242 (+) 840 WP_190270576.1 flagellar hook-basal body protein -
  GM240_RS01165 (GM240_01170) - 231299..232147 (+) 849 WP_190270577.1 flagellar hook-basal body protein -
  GM240_RS01170 (GM240_01175) - 232251..232580 (+) 330 WP_223305418.1 DNA-directed RNA polymerase subunit beta -
  GM240_RS01175 (GM240_01180) fabZ 232705..233133 (+) 429 WP_053348510.1 3-hydroxyacyl-ACP dehydratase FabZ -
  GM240_RS01180 (GM240_01185) - 233425..233730 (+) 306 WP_098177163.1 hypothetical protein -
  GM240_RS01185 (GM240_01190) - 233858..234292 (-) 435 WP_053348512.1 YwpF family protein -
  GM240_RS01190 (GM240_01195) ssbB 234678..235040 (+) 363 WP_053348513.1 single-stranded DNA-binding protein Machinery gene
  GM240_RS01195 (GM240_01200) - 235418..236422 (+) 1005 WP_056524265.1 ABC transporter ATP-binding protein -
  GM240_RS01200 (GM240_01205) - 236403..237371 (+) 969 WP_190271567.1 ABC transporter ATP-binding protein -
  GM240_RS01205 (GM240_01210) - 237416..239032 (+) 1617 WP_190270578.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13636.61 Da        Isoelectric Point: 9.6563

>NTDB_id=433533 GM240_RS01190 WP_053348513.1 234678..235040(+) (ssbB) [Peribacillus butanolivorans strain KJ40]
MINQITLVGRLTKDPELRYTPDGKAVSNITLAVNRNFRNTVGDYEADFVQCIIWKKTAENTAQYCKKGALIGITGRIQTR
RYENQEGKKVYVTEVVAEKVQFIGSKQNDVKPKDFEHIGL

Nucleotide


Download         Length: 363 bp        

>NTDB_id=433533 GM240_RS01190 WP_053348513.1 234678..235040(+) (ssbB) [Peribacillus butanolivorans strain KJ40]
ATGATCAACCAAATTACCCTTGTAGGGAGACTGACGAAGGACCCCGAATTAAGATACACACCGGATGGCAAGGCAGTTTC
CAATATTACGTTAGCGGTCAACCGTAACTTTCGTAATACAGTAGGCGATTATGAGGCGGACTTTGTACAGTGTATCATAT
GGAAAAAGACAGCTGAAAACACCGCTCAGTATTGCAAAAAAGGGGCCTTAATTGGCATTACCGGCAGAATTCAAACGAGG
AGATACGAAAACCAAGAAGGTAAAAAAGTATATGTTACCGAAGTTGTCGCCGAGAAGGTTCAATTCATAGGATCTAAACA
AAATGATGTTAAGCCAAAGGATTTTGAGCATATTGGTTTATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.404

95

0.583
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.321

88.333

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

56.604

88.333

0.5
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.283

88.333

0.4
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.396

88.333

0.383
  ssbB/cilA Streptococcus mitis NCTC 12261

43.396

88.333

0.383
  ssbA Streptococcus mutans UA159

42.453

88.333

0.375
  ssbB/cilA Streptococcus pneumoniae Rx1

42.453

88.333

0.375
  ssbB/cilA Streptococcus pneumoniae D39

42.453

88.333

0.375
  ssbB/cilA Streptococcus pneumoniae R6

42.453

88.333

0.375
  ssbB/cilA Streptococcus mitis SK321

42.453

88.333

0.375
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

87.5

0.367