Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   SCIM_RS06465 Genome accession   NC_018073
Coordinates   1341530..1342483 (+) Length   317 a.a.
NCBI ID   WP_003072006.1    Uniprot ID   T1ZDK0
Organism   Streptococcus intermedius JTH08     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1336530..1347483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS06445 (SCIM_1166) - 1338597..1339289 (-) 693 WP_003036126.1 phosphoglycerate mutase -
  SCIM_RS06450 (SCIM_1167) - 1339427..1339888 (-) 462 WP_003076242.1 Fur family transcriptional regulator -
  SCIM_RS06455 - 1340056..1340331 (-) 276 WP_003036014.1 HU family DNA-binding protein -
  SCIM_RS06460 (SCIM_1168) - 1340460..1341293 (-) 834 WP_003076577.1 DegV family protein -
  SCIM_RS06465 (SCIM_1169) ceuB 1341530..1342483 (+) 954 WP_003072006.1 ABC transporter permease Machinery gene
  SCIM_RS06470 (SCIM_1170) - 1342476..1343438 (+) 963 WP_003076294.1 iron chelate uptake ABC transporter family permease subunit -
  SCIM_RS06475 (SCIM_1171) - 1343439..1344191 (+) 753 WP_003072001.1 ABC transporter ATP-binding protein -
  SCIM_RS06480 (SCIM_1172) - 1344213..1345184 (+) 972 WP_003076389.1 siderophore ABC transporter substrate-binding protein -
  SCIM_RS06485 (SCIM_1173) - 1345257..1345979 (-) 723 WP_003076446.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35337.17 Da        Isoelectric Point: 10.0791

>NTDB_id=43332 SCIM_RS06465 WP_003072006.1 1341530..1342483(+) (ceuB) [Streptococcus intermedius JTH08]
MKQTKFLGILCLILAFISIMVGASSFSWHKLLSGETNTWLLFLESRLPRTISIILAGSSMSIAGLLMQSVTQNHFAAPST
IGTVNAAKFGMLLSLFFFPTANLAQKMLFAFLSSIFFTIIFIRFIRKLSFKEKWLLPLVGIIYSGVISAAAEILAYRFDL
VQSMTSWTQGSFAMIQTHQYEWLFLSFVILIAVWRLSATFTIMNLGEDASHNLGISFYQMEGLSLFLIALTTSVTMITVG
SLPFIGVIVPNIVRKFYGDHITRIKSITALTGAGLILICDIMSRMVIRPYEISVSLILGIFGSLTFIYLLWRGATHE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=43332 SCIM_RS06465 WP_003072006.1 1341530..1342483(+) (ceuB) [Streptococcus intermedius JTH08]
ATGAAACAGACAAAATTTTTAGGAATTCTTTGTCTTATACTGGCTTTCATTTCAATTATGGTTGGTGCTAGCAGTTTTTC
TTGGCATAAACTACTTAGTGGTGAGACGAACACTTGGCTGTTGTTTTTAGAGTCACGCTTACCAAGGACCATTAGTATCA
TTTTGGCAGGTTCTAGCATGAGTATTGCAGGGCTTTTGATGCAATCTGTTACACAGAATCATTTTGCGGCGCCTAGTACA
ATTGGAACAGTAAATGCTGCAAAGTTCGGTATGCTTCTCAGCCTCTTCTTCTTTCCAACAGCGAATTTGGCTCAAAAAAT
GCTCTTCGCCTTTCTCTCTTCTATTTTTTTTACGATTATTTTTATTAGATTTATCAGAAAATTATCATTCAAGGAAAAAT
GGTTGCTGCCACTTGTCGGAATTATTTATAGTGGTGTCATTAGTGCAGCTGCTGAAATTCTTGCCTATCGTTTTGATCTA
GTGCAAAGTATGACATCGTGGACGCAAGGATCTTTTGCAATGATTCAGACACATCAATATGAGTGGCTTTTTTTGAGTTT
TGTTATTCTGATTGCTGTCTGGCGGTTGTCTGCTACTTTTACAATCATGAATCTAGGAGAAGATGCTAGCCATAATCTAG
GGATATCTTTTTATCAAATGGAAGGATTGAGCCTATTTCTCATTGCTCTCACAACCAGTGTGACAATGATTACAGTGGGC
TCACTTCCTTTCATAGGCGTGATTGTACCAAATATTGTGCGAAAATTTTATGGAGATCATATCACGCGCATCAAAAGTAT
TACTGCCCTGACAGGAGCAGGCTTGATTTTAATCTGTGATATTATGTCACGCATGGTGATCCGTCCCTACGAAATCTCAG
TTAGTTTGATTCTGGGAATTTTTGGAAGTTTAACATTCATTTATCTTTTATGGCGAGGTGCCACTCATGAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1ZDK0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

37.5

98.423

0.369

Multiple sequence alignment