Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BCF_RS10690 Genome accession   NC_016779
Coordinates   2041286..2041621 (+) Length   111 a.a.
NCBI ID   WP_001082770.1    Uniprot ID   -
Organism   Bacillus cereus F837/76     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2036286..2046621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCF_RS10660 (bcf_10840) arsD 2036569..2036928 (+) 360 WP_000717833.1 arsenite efflux transporter metallochaperone ArsD -
  BCF_RS10665 (bcf_10845) arsA 2036947..2038707 (+) 1761 WP_000183546.1 arsenical pump-driving ATPase -
  BCF_RS10670 (bcf_10850) - 2038746..2039027 (+) 282 WP_001027741.1 iron-sulfur cluster assembly accessory protein -
  BCF_RS10675 (bcf_10855) - 2039054..2039479 (+) 426 WP_001067266.1 tyrosine-protein phosphatase -
  BCF_RS10680 (bcf_10865) - 2040087..2040323 (-) 237 WP_000021281.1 helix-turn-helix domain-containing protein -
  BCF_RS10685 (bcf_10870) - 2040637..2041158 (+) 522 WP_000348701.1 hypothetical protein -
  BCF_RS10690 (bcf_10875) ssbA 2041286..2041621 (+) 336 WP_001082770.1 single-stranded DNA-binding protein Machinery gene
  BCF_RS10695 (bcf_10880) - 2041647..2042237 (-) 591 WP_000943166.1 TetR/AcrR family transcriptional regulator -
  BCF_RS10700 (bcf_10885) - 2042339..2043472 (-) 1134 WP_001066849.1 FAD-dependent oxidoreductase -
  BCF_RS10705 (bcf_10890) - 2043731..2044858 (+) 1128 WP_000692578.1 conserved virulence factor C family protein -
  BCF_RS10710 (bcf_10895) - 2044862..2045245 (+) 384 WP_000634866.1 thiol-disulfide oxidoreductase DCC family protein -
  BCF_RS10715 (bcf_10900) - 2045329..2045763 (+) 435 WP_000063712.1 BrxA/BrxB family bacilliredoxin -
  BCF_RS10720 (bcf_10905) - 2045813..2046589 (+) 777 WP_000637444.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12817.67 Da        Isoelectric Point: 9.4347

>NTDB_id=43332 BCF_RS10690 WP_001082770.1 2041286..2041621(+) (ssbA) [Bacillus cereus F837/76]
MNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCKKGSLVGITGRIHTRN
YEDDQGKRIYITEVVIESITFLERRREGVSQ

Nucleotide


Download         Length: 336 bp        

>NTDB_id=43332 BCF_RS10690 WP_001082770.1 2041286..2041621(+) (ssbA) [Bacillus cereus F837/76]
TTGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAGCAAGGCGTCGCGTATGCACG
AGTATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTAGATTTTATAAATTGTGTCGTATGGC
GAAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAAGGGTCTCTTGTTGGAATTACCGGACGTATTCATACGAGGAAT
TACGAGGATGATCAAGGAAAGAGAATATATATAACGGAAGTCGTGATTGAGAGCATTACATTTTTGGAGAGAAGGCGCGA
AGGTGTATCGCAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.048

94.595

0.559
  ssb Latilactobacillus sakei subsp. sakei 23K

56.19

94.595

0.532
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.429

94.595

0.486
  ssbB Lactococcus lactis subsp. cremoris KW2

48.571

94.595

0.459
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.154

93.694

0.432
  ssbA Streptococcus mutans UA159

44.231

93.694

0.414
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.308

93.694

0.396
  ssbB/cilA Streptococcus mitis NCTC 12261

42.308

93.694

0.396
  ssbB/cilA Streptococcus pneumoniae D39

41.346

93.694

0.387
  ssbB/cilA Streptococcus pneumoniae R6

41.346

93.694

0.387
  ssbB/cilA Streptococcus pneumoniae Rx1

41.346

93.694

0.387
  ssbB/cilA Streptococcus mitis SK321

41.346

93.694

0.387

Multiple sequence alignment