Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   HB764_RS14045 Genome accession   NZ_CP050478
Coordinates   2983905..2985653 (-) Length   582 a.a.
NCBI ID   WP_255958200.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC011     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2978905..2990653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB764_RS14025 (HB764_13915) - 2979610..2980449 (-) 840 WP_010643506.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  HB764_RS14030 (HB764_13920) - 2980519..2982012 (-) 1494 WP_255957167.1 SPOR domain-containing protein -
  HB764_RS14035 (HB764_13925) aroB 2982066..2983166 (-) 1101 WP_255957168.1 3-dehydroquinate synthase -
  HB764_RS14040 (HB764_13930) aroK 2983198..2983716 (-) 519 WP_010443904.1 shikimate kinase AroK -
  HB764_RS14045 (HB764_13935) pilQ 2983905..2985653 (-) 1749 WP_255958200.1 type IV pilus secretin PilQ Machinery gene
  HB764_RS14050 (HB764_13940) pilP 2985688..2986203 (-) 516 WP_010643498.1 pilus assembly protein PilP Machinery gene
  HB764_RS14055 (HB764_13945) pilO 2986193..2986786 (-) 594 WP_255957169.1 type 4a pilus biogenesis protein PilO Machinery gene
  HB764_RS14060 (HB764_13950) pilN 2986779..2987354 (-) 576 WP_005432710.1 PilN domain-containing protein Machinery gene
  HB764_RS14065 (HB764_13955) pilM 2987338..2988354 (-) 1017 WP_255957170.1 type IV pilus biogenesis protein PilM Machinery gene

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 63727.64 Da        Isoelectric Point: 4.5107

>NTDB_id=433220 HB764_RS14045 WP_255958200.1 2983905..2985653(-) (pilQ) [Vibrio campbellii strain LJC011]
MKMRHGLTLTPRKLTGLFSLWFSLLLAPFVAAEEVQSNSLKSIDFRTNKDKDAVIVVELASPAAIVDIKRVQEGLSIDLL
NTSVKDDQLYLLDVKDFSTVVESVEVFRDTSTTRLVAYIDEDYSHDYRLTGRYLEVKVGKLKANEKAPDKSILDKEGKLI
SINFQDIPVRNVLQLIADYNQFNLVVSDSVEGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKDELDLREKQQ
LEKQKLEKEIGELSSEIIKVNFAKASDIAEMINGEGNISMLSDRGSMTIDERTNSLLIRELPENIEVIREIIESLDIPVK
QVQIEARIVTINEGNMDELGVRWGFTSINGSHTVGGSIENNLATIGLYDGGGDGEGDDGGSSVGIDDFLNVNLAATSPNA
TSIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVTFKKAVLSLKVTPQ
ITPDNRLVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFR
RSYENVGKSELLIFVTPKIVIQ

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=433220 HB764_RS14045 WP_255958200.1 2983905..2985653(-) (pilQ) [Vibrio campbellii strain LJC011]
ATGAAAATGAGACACGGATTAACACTGACACCAAGGAAGCTAACAGGGCTCTTCTCTTTATGGTTCTCTCTACTTTTAGC
CCCTTTCGTCGCAGCAGAAGAAGTACAGTCTAACTCGCTTAAGAGCATCGACTTCCGTACGAACAAAGACAAAGACGCCG
TGATTGTGGTTGAGCTCGCATCACCCGCTGCGATTGTTGATATTAAACGCGTACAAGAAGGCTTGAGTATCGACTTACTC
AACACCTCCGTTAAAGATGACCAGCTTTACCTACTTGATGTGAAAGATTTCTCGACAGTTGTCGAGAGCGTTGAGGTATT
CCGCGATACTTCTACAACACGTCTGGTGGCTTATATCGATGAGGACTATTCTCACGACTACCGTCTTACTGGTCGTTATT
TAGAGGTAAAGGTTGGCAAGCTTAAAGCCAACGAAAAAGCGCCGGATAAAAGCATTTTGGACAAAGAAGGCAAGCTAATT
TCGATTAACTTCCAAGACATTCCTGTGCGAAACGTGTTGCAACTTATCGCCGACTACAATCAATTTAACTTGGTCGTCTC
TGACTCGGTCGAGGGTAACTTGACCTTGCGTTTGGATGGTGTGCCTTGGCAGCAAGTACTTGACATTATCTTGCAAGTGA
AAGGGTTAGATAAGCGTGTTGATGGTAATGTCATTCTCGTCGCACCAAAAGATGAATTGGATCTGCGCGAGAAGCAGCAA
CTCGAAAAGCAAAAGCTAGAGAAAGAGATCGGTGAGCTTTCATCAGAGATCATCAAGGTGAACTTCGCTAAAGCGTCAGA
CATTGCTGAGATGATCAATGGAGAGGGCAACATCAGTATGCTTTCAGATCGAGGCAGCATGACCATTGATGAGCGTACCA
ACTCGTTATTGATTCGTGAGTTACCTGAGAATATTGAAGTGATTCGCGAGATCATAGAATCATTGGATATTCCTGTAAAA
CAGGTTCAGATTGAAGCACGTATTGTGACTATTAATGAAGGTAACATGGACGAACTTGGCGTTCGTTGGGGCTTCACTTC
CATTAATGGCAGTCATACTGTGGGTGGTTCAATTGAGAATAACCTTGCGACAATCGGCCTGTACGATGGCGGCGGTGACG
GTGAAGGTGATGACGGTGGCAGCAGTGTGGGTATTGATGACTTTCTCAACGTTAACCTTGCCGCGACCAGTCCAAATGCG
ACCAGTATAGCCTTTCAAGTTGCGAAGTTAGGTTCGGACACCTTACTAGATTTGGAACTTTCGGCGCTGCAACAAGAATC
GAAAGCAGAAATTATTTCTAGCCCACGTTTGATAACCACGAATAAGAAACCAGCTTACATTGAGCAGGGTACCGAGATCC
CTTACCTTGAATCTTCTTCCAGTGGTGCGACTTCTGTGACGTTCAAAAAAGCGGTATTGAGCTTGAAAGTGACGCCACAG
ATTACGCCTGACAACCGTTTGGTGTTGGATTTGAGCGTTACGCAAGACAGACCGGGCCAAGTGGTAAAAACAGGCACTGG
TGAGGCGGTGGCGATAGATACGCAACGTATTGGTACACAAGTTTTAGTTAATAATGGCGAGACAGTCGTGTTGGGCGGTA
TTTTTCAACACAGCATTACAAACTCCGTCGATAAGGTGCCTTTATTAGGTGATTTGCCGCTGTTAGGTGCGCTTTTCCGT
CGAAGTTACGAAAATGTCGGTAAAAGTGAACTACTGATTTTTGTTACACCTAAAATTGTGATTCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(256-321)

Bacterial type II and III secretion system protein (Secretin)

(422-580)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

99.313

100

0.993
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

77.113

97.595

0.753
  pilQ Vibrio cholerae strain A1552

77.113

97.595

0.753
  pilQ Legionella pneumophila strain ERS1305867

41.924

94.674

0.397
  pilQ Legionella pneumophila strain Lp02

41.924

94.674

0.397
  pilQ Pseudomonas aeruginosa PAK

40.497

96.735

0.392
  pilQ Acinetobacter baumannii strain A118

37.438

100

0.387
  pilQ Acinetobacter baumannii D1279779

37.438

100

0.387
  comQ Acinetobacter baylyi ADP1

37.177

99.828

0.371