Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   HB764_RS14050 Genome accession   NZ_CP050478
Coordinates   2985688..2986203 (-) Length   171 a.a.
NCBI ID   WP_010643498.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC011     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2980688..2991203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB764_RS14035 (HB764_13925) aroB 2982066..2983166 (-) 1101 WP_255957168.1 3-dehydroquinate synthase -
  HB764_RS14040 (HB764_13930) aroK 2983198..2983716 (-) 519 WP_010443904.1 shikimate kinase AroK -
  HB764_RS14045 (HB764_13935) pilQ 2983905..2985653 (-) 1749 WP_255958200.1 type IV pilus secretin PilQ Machinery gene
  HB764_RS14050 (HB764_13940) pilP 2985688..2986203 (-) 516 WP_010643498.1 pilus assembly protein PilP Machinery gene
  HB764_RS14055 (HB764_13945) pilO 2986193..2986786 (-) 594 WP_255957169.1 type 4a pilus biogenesis protein PilO Machinery gene
  HB764_RS14060 (HB764_13950) pilN 2986779..2987354 (-) 576 WP_005432710.1 PilN domain-containing protein Machinery gene
  HB764_RS14065 (HB764_13955) pilM 2987338..2988354 (-) 1017 WP_255957170.1 type IV pilus biogenesis protein PilM Machinery gene
  HB764_RS14070 (HB764_13960) - 2988533..2991100 (+) 2568 WP_255957171.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19196.27 Da        Isoelectric Point: 10.0349

>NTDB_id=433221 HB764_RS14050 WP_010643498.1 2985688..2986203(-) (pilP) [Vibrio campbellii strain LJC011]
MRNKSLLMVCMVSLLSGCQANDESLTDFIRGVENQARRDVAKLQPTEEYVVVSYEPEILRAPFELPKEATIATQPVARQD
CWQPPSRKRTDKLERFPLNQLRLKGVMGMGSSVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVSHSYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=433221 HB764_RS14050 WP_010643498.1 2985688..2986203(-) (pilP) [Vibrio campbellii strain LJC011]
ATGCGAAATAAATCTTTGCTGATGGTTTGTATGGTGAGTCTGCTGAGTGGTTGCCAAGCCAATGATGAGTCACTAACCGA
TTTTATTCGCGGTGTAGAAAACCAAGCACGCCGTGATGTCGCCAAACTCCAGCCGACTGAAGAATATGTAGTGGTGAGTT
ACGAGCCTGAAATTTTGCGTGCCCCTTTTGAACTGCCAAAAGAGGCCACCATCGCAACTCAACCTGTTGCGAGGCAAGAC
TGTTGGCAACCGCCGTCAAGAAAGCGCACAGACAAACTGGAACGTTTCCCACTCAACCAACTTCGCCTTAAGGGTGTGAT
GGGAATGGGCAGCAGCGTCTCGGGTTTGGTTCAAGCTCCGAATGGCACAGTTTACAAAGTGAAGCCAGGTCAATACCTCG
GACGTAACAATGGCAAGGTAACCCACGTATCCCACAGCTATTTATTGATCAATGAAACCTTGCCAGACGGTTTAGGTTGT
TGGCAAAAGCGCAAAGTGAAGTTGGCGTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

100

100

1
  pilP Vibrio cholerae strain A1552

56.395

100

0.567