Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   VEJY3_RS14240 Genome accession   NC_016613
Coordinates   3144333..3146036 (-) Length   567 a.a.
NCBI ID   WP_014233148.1    Uniprot ID   -
Organism   Vibrio sp. EJY3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3139333..3151036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEJY3_RS14220 (VEJY3_14030) - 3140039..3140878 (-) 840 WP_014233144.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  VEJY3_RS14225 (VEJY3_14035) - 3140948..3142441 (-) 1494 WP_014233145.1 SPOR domain-containing protein -
  VEJY3_RS14230 (VEJY3_14040) aroB 3142494..3143594 (-) 1101 WP_014233146.1 3-dehydroquinate synthase -
  VEJY3_RS14235 (VEJY3_14045) aroK 3143626..3144144 (-) 519 WP_014233147.1 shikimate kinase AroK -
  VEJY3_RS14240 (VEJY3_14050) pilQ 3144333..3146036 (-) 1704 WP_014233148.1 type IV pilus secretin PilQ Machinery gene
  VEJY3_RS14245 (VEJY3_14055) pilP 3146104..3146619 (-) 516 WP_014233149.1 pilus assembly protein PilP Machinery gene
  VEJY3_RS14250 (VEJY3_14060) pilO 3146609..3147202 (-) 594 WP_014233150.1 type 4a pilus biogenesis protein PilO Machinery gene
  VEJY3_RS14255 (VEJY3_14065) pilN 3147195..3147770 (-) 576 WP_014233151.1 PilN domain-containing protein Machinery gene
  VEJY3_RS14260 (VEJY3_14070) pilM 3147754..3148770 (-) 1017 WP_014233152.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 62086.65 Da        Isoelectric Point: 4.3016

>NTDB_id=43106 VEJY3_RS14240 WP_014233148.1 3144333..3146036(-) (pilQ) [Vibrio sp. EJY3]
MLTGLLSFWLVLLFTPFALADGGMSNALKSIDFRTNKDKDAVIVVELSSPAAIVDIQRVQEGLSIDLLNTSVKDEQLYLL
DVKDFSTVVDSVEVFRDTSTTRLVTHISDDYTHDYRLAGRYLEITVSKLKSDEKTPDKSILEKEGKLISINFQDIPVRNV
LQLIADYNQFNLVVSDSVEGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPTDELDLREKQQLEKQQLEEEMGE
LSSEIIKVNFAKASDIAEMINGEGNISMLSERGSMTIDERTNSLLVRELPENILVIRDIIESLDIPVKQVQIEARIVTVS
EGNMDELGIRWGFSSINGNNTVGGSIENNLATIGLYEGDGEEGEGGSVGIDDFLNVNLAATNPSATSIAFQVAKLGSDTL
LDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATTITFKKAVLSLKVTPQITPDNRLVLDLSVTQ
DRPGQVVKTGTGEAVTIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRRSYEKVGKSELLIFV
TPKVVIQ

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=43106 VEJY3_RS14240 WP_014233148.1 3144333..3146036(-) (pilQ) [Vibrio sp. EJY3]
ATGCTCACTGGGCTCTTATCCTTTTGGTTAGTTTTACTTTTTACCCCTTTTGCTTTGGCTGATGGCGGGATGTCTAATGC
GTTAAAGAGTATCGACTTTCGCACGAATAAGGACAAAGACGCGGTGATTGTGGTGGAACTGTCTTCACCAGCTGCGATTG
TCGATATTCAGCGGGTTCAGGAAGGACTGAGCATCGACTTGCTGAATACGTCAGTGAAAGATGAGCAGTTATATCTCCTC
GATGTAAAAGACTTTTCAACGGTAGTGGACAGCGTGGAAGTCTTTCGTGATACCTCGACGACTCGTTTGGTTACGCACAT
CAGTGATGATTACACCCACGATTACCGCTTGGCAGGGCGCTATTTGGAAATCACGGTCAGTAAACTCAAGTCTGATGAAA
AAACACCAGATAAGAGCATTTTAGAGAAAGAAGGCAAACTGATATCGATTAACTTCCAGGATATCCCGGTACGTAACGTC
TTACAGCTCATTGCCGACTATAACCAGTTTAACCTGGTGGTATCAGACTCGGTCGAAGGCAACCTGACACTGCGACTTGA
TGGTGTACCTTGGCAGCAGGTTTTGGACATTATTCTGCAAGTAAAAGGGTTGGATAAGCGAGTAGATGGTAATGTCATTC
TGGTCGCGCCGACCGATGAACTTGACCTTCGAGAGAAGCAGCAACTAGAGAAGCAGCAACTTGAAGAGGAAATGGGCGAA
CTGTCGTCTGAAATCATCAAAGTGAATTTTGCCAAAGCATCCGATATCGCTGAGATGATTAATGGTGAAGGCAATATCAG
CATGCTCTCTGAGCGAGGCAGCATGACGATTGATGAGCGCACTAACTCACTATTGGTCAGAGAATTGCCAGAGAATATTT
TGGTTATTCGTGACATTATCGAATCACTCGATATTCCGGTTAAGCAGGTCCAAATCGAAGCGAGGATTGTCACCGTTAGT
GAAGGGAATATGGATGAACTTGGCATTCGATGGGGATTCTCTTCCATCAACGGCAATAACACCGTTGGTGGCTCGATTGA
GAATAACCTCGCAACCATTGGGCTTTATGAAGGTGATGGTGAAGAGGGTGAGGGCGGCAGTGTTGGAATTGATGATTTTC
TTAACGTCAATCTGGCCGCTACTAACCCGAGCGCAACCAGCATTGCGTTTCAGGTCGCCAAGTTGGGCTCTGACACTTTG
CTCGATCTGGAACTTTCTGCACTGCAGCAGGAGTCGAAAGCTGAGATCATCTCAAGCCCTCGTTTAATCACGACTAATAA
AAAACCTGCCTATATAGAACAAGGTACAGAAATTCCGTATCTAGAATCATCATCGAGTGGTGCGACAACCATCACGTTCA
AAAAAGCGGTGTTAAGTTTAAAGGTAACGCCACAAATTACCCCGGATAACCGTCTGGTGTTGGATTTAAGTGTTACTCAG
GACAGACCGGGGCAAGTGGTAAAAACGGGAACTGGCGAAGCGGTCACAATAGACACCCAGAGAATAGGTACTCAAGTCTT
GGTAAACAACGGTGAGACGGTTGTTCTTGGCGGCATTTTCCAACACAGCATTACCAACTCTGTCGATAAAGTGCCATTAC
TCGGTGATCTGCCGTTATTAGGCGCTCTTTTCCGCAGAAGTTATGAAAAAGTTGGTAAAAGTGAACTGCTGATTTTCGTT
ACACCAAAGGTTGTTATTCAATAG

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(244-309)

Bacterial type II and III secretion system protein (Secretin)

(407-565)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

89.594

100

0.896
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

75.929

99.647

0.757
  pilQ Vibrio cholerae strain A1552

75.929

99.647

0.757
  pilQ Legionella pneumophila strain ERS1305867

41.091

97.002

0.399
  pilQ Legionella pneumophila strain Lp02

41.091

97.002

0.399
  pilQ Pseudomonas aeruginosa PAK

40.647

98.06

0.399
  pilQ Acinetobacter baumannii D1279779

37.99

100

0.393
  pilQ Acinetobacter baumannii strain A118

37.99

100

0.393
  comQ Acinetobacter baylyi ADP1

37.651

100

0.384

Multiple sequence alignment