Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BDGL_003239 Genome accession   NC_016603
Coordinates   3474590..3475816 (-) Length   408 a.a.
NCBI ID   YP_004997507.1    Uniprot ID   F0KLA8
Organism   Acinetobacter pittii PHEA-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3469590..3480816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BDGL_003232 - 3469606..3470916 (+) 1311 YP_004997500.1 hypothetical protein -
  BDGL_003233 - 3470993..3471319 (+) 327 YP_004997501.1 hypothetical protein -
  BDGL_003234 rlmB 3471422..3472171 (+) 750 YP_004997502.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  BDGL_003235 - 3472207..3473121 (+) 915 YP_004997503.1 hypothetical protein -
  BDGL_003236 coaE 3473118..3473714 (-) 597 YP_004997504.1 dephosphocoenzyme A kinase -
  BDGL_003237 pilD 3473716..3474447 (-) 732 YP_004997505.1 type 4 prepilin-like proteins leader peptide processing enzyme Machinery gene
  BDGL_003238 pilD 3474399..3474590 (-) 192 YP_004997506.1 hypothetical protein Machinery gene
  BDGL_003239 pilC 3474590..3475816 (-) 1227 YP_004997507.1 type 4 fimbrial assembly protein Machinery gene
  BDGL_003240 pilB 3475843..3477489 (-) 1647 YP_004997508.1 type 4 fimbrial biogenesis protein Machinery gene
  BDGL_003241 tpiA 3477838..3478641 (+) 804 YP_004997509.1 triosephosphate isomerase -
  BDGL_003242 secG 3478654..3478983 (+) 330 YP_004997510.1 preprotein translocase subunit SecG -
  BDGL_003243 - 3479621..3480145 (+) 525 YP_004997511.1 hypothetical protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45027.45 Da        Isoelectric Point: 9.8207

>NTDB_id=43000 BDGL_003239 YP_004997507.1 3474590..3475816(-) (pilC) [Acinetobacter pittii PHEA-2]
MTVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAVIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=43000 BDGL_003239 YP_004997507.1 3474590..3475816(-) (pilC) [Acinetobacter pittii PHEA-2]
ATGACTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGCGA
ACTTCCGGCTAAGAATATGGCCTTAGCCAAAGTCACCCTACGCAAACAAGGGGTAACTGTCCGTAATATTCGAGAAAAGC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAGAAAGTATCCACACTCGATATCACGATTTTCACCCGTCAACTTGCAACG
ATGATGAAAGCAGGGGTTCCCCTGGTACAAGGCTTTGAAATTGTAGCGGAAGGTCTAGAAAACCCTGCTATGCGCGAGGT
GGTACTCGGGATTAAAGGCGAAGTTGAAGGTGGTAGTACCTTTGCTTCAGCTTTAAGAAAGTATCCTCAACACTTCGATA
ACTTGTTTTGTTCTCTTGTAGAGTCTGGTGAACAATCTGGTGCGCTTGAAACCATGTTGGACCGTGTGGCAATTTACAAA
GAAAAAAGTGAATTACTTAAGCAGAAAATTAAGAAGGCTATGAAATATCCAGCAACGGTTATTGTAGTTGCTGTGGTTGT
TACCATTATTTTGATGGTTAAAGTAGTTCCTGTTTTCCAAGACCTGTTTTCTTCTTTTGGTGCAGATTTACCTGCATTCA
CCCAAATGGTCGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGTAATTGGAGCAGTGATTGCT
GCCTTTCTGGAAGCCAAGAAGCGCAGTAAAAAATTCCGTGATGGATTAGATAAACTTACACTGAAACTACCTATCTTTGG
CGATCTGGTTTATAAGGCGATTATTGCCCGTTATAGCCGTACTTTAGCCACCACGTTTGCCGCTGGTGTTCCGCTCATTG
ATGCGCTTGAGTCAACGGCTGGTGCAACCAACAATGTCATTTATGAAGAAGCAGTCATGAAAATTCGTGAAGATGTAGCT
ACAGGCCAACAACTTCAATTTGCAATGCGTGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTTGATAATGCCGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTGCTCGTAGGCGGTCTAGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTCATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F0KLA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.794

100

0.978
  pilC Acinetobacter baylyi ADP1

85.539

100

0.855
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria gonorrhoeae MS11

46.231

97.549

0.451
  pilG Neisseria meningitidis 44/76-A

46.231

97.549

0.451
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.342

100

0.404
  pilC Thermus thermophilus HB27

37.157

98.284

0.365

Multiple sequence alignment