Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   BDGL_003240 Genome accession   NC_016603
Coordinates   3475843..3477489 (-) Length   548 a.a.
NCBI ID   YP_004997508.1    Uniprot ID   -
Organism   Acinetobacter pittii PHEA-2     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3470843..3482489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BDGL_003233 - 3470993..3471319 (+) 327 YP_004997501.1 hypothetical protein -
  BDGL_003234 rlmB 3471422..3472171 (+) 750 YP_004997502.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  BDGL_003235 - 3472207..3473121 (+) 915 YP_004997503.1 hypothetical protein -
  BDGL_003236 coaE 3473118..3473714 (-) 597 YP_004997504.1 dephosphocoenzyme A kinase -
  BDGL_003237 pilD 3473716..3474447 (-) 732 YP_004997505.1 type 4 prepilin-like proteins leader peptide processing enzyme Machinery gene
  BDGL_003238 pilD 3474399..3474590 (-) 192 YP_004997506.1 hypothetical protein Machinery gene
  BDGL_003239 pilC 3474590..3475816 (-) 1227 YP_004997507.1 type 4 fimbrial assembly protein Machinery gene
  BDGL_003240 pilB 3475843..3477489 (-) 1647 YP_004997508.1 type 4 fimbrial biogenesis protein Machinery gene
  BDGL_003241 tpiA 3477838..3478641 (+) 804 YP_004997509.1 triosephosphate isomerase -
  BDGL_003242 secG 3478654..3478983 (+) 330 YP_004997510.1 preprotein translocase subunit SecG -
  BDGL_003243 - 3479621..3480145 (+) 525 YP_004997511.1 hypothetical protein -
  BDGL_003244 nusA 3480183..3481667 (+) 1485 YP_004997512.1 nusA; transcription elongation factor NusA -

Sequence

Protein


Download         Length: 548 a.a.        Molecular weight: 60929.88 Da        Isoelectric Point: 4.8499

>NTDB_id=43001 BDGL_003240 YP_004997508.1 3475843..3477489(-) (pilB) [Acinetobacter pittii PHEA-2]
MSAATMQTALDAAKRAKRDTVAYLIEEVHLSPSLLAETISIEFAEPYFDLDVYDTSQIPKDLVDQKLVLKHRVLPLIQRG
QILYVATSNPSNIEAIDAIRFNSKLMVEPVIVEHHKLEKILAQQFTEESSFEFSDEEFDLDVDLEAPASQEDEEETPQGD
EAPIVKYINKLLIDAIRMGASDLHFEPYEKSYRVRYRVDGVLRQIANPPLQLANRLASRLKVMSQMDISEKRVPQDGRIK
LKLSKTKAIDFRVNSLPTLFGEKLVLRILDPSSAMLGIDALGYEEDQKALFLEALDKPQGMLLITGPTGSGKTVSLYTGL
NILNTESSNISTAEDPVEINLEGINQVNVNPKVGLTFSAALKSFLRQDPDIIMVGEIRDLETAEIAIKAAQTGHMVMSTL
HTNSAPETLTRLRNMGVPSFNIATSVNLVIAQRLARRLCPQCKTPADIPKQSLLEMGFTDQDLTHPDFQVFQPVGCTECR
EGYKGRVGIYEVMKVTPEISKIIMEDGNALEIAAASEKLGFNNLRRSGLKKVMQGVTSLQEVNRVTSE

Nucleotide


Download         Length: 1647 bp        

>NTDB_id=43001 BDGL_003240 YP_004997508.1 3475843..3477489(-) (pilB) [Acinetobacter pittii PHEA-2]
GTGTCGGCAGCGACCATGCAAACAGCATTAGATGCAGCAAAGAGAGCTAAACGGGATACAGTTGCGTACCTGATTGAAGA
GGTTCATCTCTCCCCTTCTTTATTAGCTGAAACAATTTCTATTGAATTTGCTGAACCATATTTTGATCTGGATGTTTACG
ATACAAGCCAAATTCCCAAGGATTTGGTCGATCAGAAACTGGTTTTAAAACATCGGGTCTTACCTCTCATACAAAGAGGA
CAGATTTTATATGTCGCAACCAGCAACCCGAGTAATATTGAAGCAATTGATGCCATTCGCTTTAATAGCAAGCTCATGGT
TGAACCAGTTATTGTCGAGCACCATAAGCTTGAGAAAATTCTGGCGCAGCAATTTACCGAAGAAAGCAGCTTCGAATTTA
GTGATGAAGAGTTTGATCTTGATGTAGACCTAGAAGCTCCAGCCTCACAAGAGGATGAGGAAGAAACTCCTCAAGGCGAT
GAAGCACCTATTGTTAAATATATTAATAAATTACTCATCGATGCGATTCGTATGGGGGCTTCAGACTTACATTTTGAACC
ATACGAGAAATCATATCGGGTTCGTTATCGAGTCGATGGAGTGTTGCGTCAGATTGCAAATCCGCCTTTACAATTGGCTA
ACCGTTTAGCTTCACGTTTAAAAGTCATGTCTCAAATGGATATTTCCGAAAAACGAGTGCCTCAAGATGGTCGTATCAAG
CTTAAGTTATCAAAAACTAAAGCAATCGATTTTCGTGTGAACTCACTTCCAACCTTGTTTGGTGAAAAACTGGTTCTGCG
TATTCTCGATCCCTCTAGTGCAATGCTCGGAATTGATGCTTTAGGATATGAAGAAGATCAGAAAGCTCTTTTTTTAGAAG
CACTCGATAAACCACAAGGTATGCTTTTAATTACAGGTCCTACCGGTTCTGGTAAAACAGTATCTTTATATACTGGCTTA
AATATTTTAAATACTGAAAGCTCTAATATTTCCACTGCCGAAGATCCAGTCGAAATCAACCTTGAAGGTATTAATCAAGT
TAACGTTAACCCAAAAGTAGGTCTTACTTTTTCAGCCGCACTGAAATCATTTTTACGTCAAGACCCTGACATTATTATGG
TCGGTGAGATTCGTGACTTAGAAACGGCTGAAATTGCGATTAAAGCTGCGCAAACCGGTCACATGGTAATGTCCACACTG
CATACCAATAGTGCGCCAGAAACACTTACTCGCCTACGTAATATGGGTGTTCCATCCTTTAATATCGCAACGTCTGTCAA
TCTGGTGATTGCTCAACGTTTGGCGCGTCGGTTATGCCCACAGTGTAAAACACCTGCCGACATTCCTAAACAGAGCCTAT
TAGAAATGGGCTTTACCGACCAAGATTTAACCCATCCCGATTTTCAAGTTTTTCAACCTGTAGGTTGTACTGAGTGTCGT
GAAGGCTACAAAGGTCGAGTAGGTATTTACGAGGTGATGAAAGTTACACCTGAAATTTCCAAGATTATTATGGAAGATGG
CAATGCTTTAGAAATCGCTGCTGCTTCTGAAAAACTGGGGTTTAATAATCTGCGTCGTTCAGGGTTAAAGAAAGTCATGC
AAGGTGTTACTTCCTTACAAGAAGTTAACCGCGTGACCAGTGAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(24-123)

Type II/IV secretion system protein (T2SSE)

(170-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

95.073

100

0.951
  pilB Acinetobacter baylyi ADP1

78.285

100

0.783
  pilB Legionella pneumophila strain ERS1305867

53.672

96.898

0.52
  pilF Neisseria gonorrhoeae MS11

51.397

97.993

0.504
  pilB Vibrio parahaemolyticus RIMD 2210633

51.321

96.715

0.496
  pilB Vibrio campbellii strain DS40M4

50.766

95.255

0.484
  pilB Vibrio cholerae strain A1552

50.096

94.708

0.474
  pilF Thermus thermophilus HB27

37.024

100

0.372

Multiple sequence alignment