Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   BDGL_003238 Genome accession   NC_016603
Coordinates   3474399..3474590 (-) Length   63 a.a.
NCBI ID   YP_004997506.1    Uniprot ID   F0KLA7
Organism   Acinetobacter pittii PHEA-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3469399..3479590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BDGL_003232 - 3469606..3470916 (+) 1311 YP_004997500.1 hypothetical protein -
  BDGL_003233 - 3470993..3471319 (+) 327 YP_004997501.1 hypothetical protein -
  BDGL_003234 rlmB 3471422..3472171 (+) 750 YP_004997502.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  BDGL_003235 - 3472207..3473121 (+) 915 YP_004997503.1 hypothetical protein -
  BDGL_003236 coaE 3473118..3473714 (-) 597 YP_004997504.1 dephosphocoenzyme A kinase -
  BDGL_003237 pilD 3473716..3474447 (-) 732 YP_004997505.1 type 4 prepilin-like proteins leader peptide processing enzyme Machinery gene
  BDGL_003238 pilD 3474399..3474590 (-) 192 YP_004997506.1 hypothetical protein Machinery gene
  BDGL_003239 pilC 3474590..3475816 (-) 1227 YP_004997507.1 type 4 fimbrial assembly protein Machinery gene
  BDGL_003240 pilB 3475843..3477489 (-) 1647 YP_004997508.1 type 4 fimbrial biogenesis protein Machinery gene
  BDGL_003241 tpiA 3477838..3478641 (+) 804 YP_004997509.1 triosephosphate isomerase -
  BDGL_003242 secG 3478654..3478983 (+) 330 YP_004997510.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 63 a.a.        Molecular weight: 7367.75 Da        Isoelectric Point: 6.0429

>NTDB_id=42999 BDGL_003238 YP_004997506.1 3474399..3474590(-) (pilD) [Acinetobacter pittii PHEA-2]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQIRNVKYCLIPNNP

Nucleotide


Download         Length: 192 bp        

>NTDB_id=42999 BDGL_003238 YP_004997506.1 3474399..3474590(-) (pilD) [Acinetobacter pittii PHEA-2]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCTCTTTATATTGCAGTTGCACTATTGAGCCTATGTATTGG
TAGCTTTTTGAATGTAGTGATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATCAGGAATG
TCAAATATTGCTTAATCCCGAACAACCCATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F0KLA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

94.118

80.952

0.762
  pilD Acinetobacter nosocomialis M2

92.157

80.952

0.746

Multiple sequence alignment