Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   BDGL_003237 Genome accession   NC_016603
Coordinates   3473716..3474447 (-) Length   243 a.a.
NCBI ID   YP_004997505.1    Uniprot ID   F0KLA6
Organism   Acinetobacter pittii PHEA-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3468716..3479447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BDGL_003232 - 3469606..3470916 (+) 1311 YP_004997500.1 hypothetical protein -
  BDGL_003233 - 3470993..3471319 (+) 327 YP_004997501.1 hypothetical protein -
  BDGL_003234 rlmB 3471422..3472171 (+) 750 YP_004997502.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  BDGL_003235 - 3472207..3473121 (+) 915 YP_004997503.1 hypothetical protein -
  BDGL_003236 coaE 3473118..3473714 (-) 597 YP_004997504.1 dephosphocoenzyme A kinase -
  BDGL_003237 pilD 3473716..3474447 (-) 732 YP_004997505.1 type 4 prepilin-like proteins leader peptide processing enzyme Machinery gene
  BDGL_003238 pilD 3474399..3474590 (-) 192 YP_004997506.1 hypothetical protein Machinery gene
  BDGL_003239 pilC 3474590..3475816 (-) 1227 YP_004997507.1 type 4 fimbrial assembly protein Machinery gene
  BDGL_003240 pilB 3475843..3477489 (-) 1647 YP_004997508.1 type 4 fimbrial biogenesis protein Machinery gene
  BDGL_003241 tpiA 3477838..3478641 (+) 804 YP_004997509.1 triosephosphate isomerase -
  BDGL_003242 secG 3478654..3478983 (+) 330 YP_004997510.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27153.64 Da        Isoelectric Point: 7.5439

>NTDB_id=42998 BDGL_003237 YP_004997505.1 3473716..3474447(-) (pilD) [Acinetobacter pittii PHEA-2]
MSNQECQILLNPEQPMIEHEKLTLSKPASSCPACQQPIRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLV
VVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDRFTLPLAALGLGINTFSIYTSPNSAIWGYLIGFLCLWIVYYLFK
VITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSLLGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIY
LGG

Nucleotide


Download         Length: 732 bp        

>NTDB_id=42998 BDGL_003237 YP_004997505.1 3473716..3474447(-) (pilD) [Acinetobacter pittii PHEA-2]
ATGTCAAATCAGGAATGTCAAATATTGCTTAATCCCGAACAACCCATGATTGAGCATGAAAAGCTGACATTAAGTAAACC
TGCTTCATCATGTCCTGCATGTCAGCAACCGATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAG
GAAAATGTGGCCATTGCCAACATCCTATTAGCATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTA
GTCGTCATGGTTTTTGGTCCAACCCTGCAAATGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTAT
AGACTTTGATACTCAGCTACTACCTGACCGTTTCACCCTACCTTTGGCTGCGCTCGGCTTAGGTATTAATACCTTTAGTA
TTTACACCTCGCCTAACTCAGCCATTTGGGGATATTTAATCGGCTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAA
GTGATTACAGGCAAAGAAGGTATGGGTTACGGCGACTTTAAATTGCTTGCCGCATTAGGCGCGTGGATGGGGCCATTGAT
GCTGCCCTTAATTGTGCTATTGTCATCTTTACTAGGTGCAATTATTGGCATCATTTTACTGAAATTGCGCAATGATAATC
AGCCCTTTGCGTTTGGGCCATATATTGCCATTGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTAT
TTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(95-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F0KLA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

95.436

99.177

0.947
  pilD Acinetobacter nosocomialis M2

95.436

99.177

0.947
  pilD Vibrio cholerae strain A1552

53.279

100

0.535
  pilD Vibrio campbellii strain DS40M4

52.066

99.588

0.519
  pilD Neisseria gonorrhoeae MS11

47.059

90.947

0.428

Multiple sequence alignment