NTDB

Overview

Name	pilA	Type	Machinery gene
Locus tag	HAP34_RS23385	Genome accession	NZ_CP050052
Coordinates	5068268..5068717 (-)	Length	149 a.a.
NCBI ID	WP_003112842.1	Uniprot ID	P04739
Organism	Pseudomonas aeruginosa strain LIUYANG-E
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5063268..5073717

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HAP34_RS23365 (HAP34_23430)	ampD	5063960..5064526 (-)	567	WP_003112844.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
HAP34_RS23370 (HAP34_23435)	-	5064677..5066932 (-)	2256	WP_003112843.1	DUF1631 domain-containing protein	-
HAP34_RS23375 (HAP34_23440)	nadC	5067218..5068066 (+)	849	WP_003104915.1	carboxylating nicotinate-nucleotide diphosphorylase	-
HAP34_RS23385 (HAP34_23450)	pilA	5068268..5068717 (-)	450	WP_003112842.1	type 4a pilus biogenesis protein PilA	Machinery gene
HAP34_RS23390 (HAP34_23455)	pilB	5068949..5070649 (+)	1701	WP_003112841.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HAP34_RS23395 (HAP34_23460)	pilC	5070653..5071873 (+)	1221	WP_003112840.1	type 4a pilus biogenesis protein PilC	Machinery gene
HAP34_RS23400 (HAP34_23465)	pilD	5071877..5072749 (+)	873	WP_003112839.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
HAP34_RS23405 (HAP34_23470)	coaE	5072746..5073357 (+)	612	WP_003112838.1	dephospho-CoA kinase	-
HAP34_RS23410 (HAP34_23475)	yacG	5073354..5073554 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-

Sequence

Protein

Download Length: 149 a.a. Molecular weight: 15511.78 Da Isoelectric Point: 6.2905

                                >NTDB_id=429751 HAP34_RS23385 WP_003112842.1 5068268..5068717(-) (pilA) [Pseudomonas aeruginosa strain LIUYANG-E]

MKAQKGFTLIELMIVVAIIGILAAIAIPQYQNYVARSEGASALATINPLKTTVEESLSRGIAGSKIKIGTTASTATETYV

GVEPDANKLGVIAVAIEDSGAGDITFTFQTGTSSPKNATKVITLNRTADGVWACKSTQDPMFTPKGCDN

Nucleotide

Download Length: 450 bp

                                >NTDB_id=429751 HAP34_RS23385 WP_003112842.1 5068268..5068717(-) (pilA) [Pseudomonas aeruginosa strain LIUYANG-E]

ATGAAAGCTCAAAAAGGCTTTACCTTGATCGAACTGATGATCGTGGTTGCGATCATCGGTATCCTGGCGGCAATTGCCAT

TCCCCAGTATCAGAACTATGTTGCGCGTTCGGAAGGTGCTTCGGCGCTGGCGACGATCAACCCGCTGAAGACCACTGTTG

AAGAGTCGCTGTCGCGTGGAATTGCTGGTAGCAAAATTAAAATTGGTACTACTGCTTCTACTGCGACCGAAACATATGTC

GGCGTCGAGCCGGATGCCAACAAGTTGGGTGTAATTGCTGTAGCAATCGAAGATAGTGGTGCGGGTGATATTACCTTTAC

CTTCCAGACTGGTACCTCTAGTCCCAAGAATGCTACTAAAGTTATCACTCTGAACCGTACTGCGGATGGGGTCTGGGCTT

GTAAATCTACCCAGGATCCGATGTTCACTCCGAAAGGTTGTGATAACTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
PDB	1PAN
PDB	1PAO
PDB	8TUM
PDB	8TUW
PDB	9EWX

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilA	Pseudomonas aeruginosa PAK	67.785	100	0.678
pilA	Acinetobacter baumannii strain A118	48	100	0.483
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	48.322	100	0.483
pilA	Vibrio cholerae strain A1552	48.322	100	0.483
pilA	Vibrio cholerae C6706	48.322	100	0.483
pilA/pilAI	Pseudomonas stutzeri DSM 10701	45.638	100	0.456
pilA	Vibrio parahaemolyticus RIMD 2210633	44.898	98.658	0.443
comP	Acinetobacter baylyi ADP1	41.83	100	0.43
pilA/pilAII	Pseudomonas stutzeri DSM 10701	44.056	95.973	0.423
pilA2	Legionella pneumophila str. Paris	38.776	98.658	0.383
pilA2	Legionella pneumophila strain ERS1305867	38.095	98.658	0.376

Detailed information NTG0429751