Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BHV55_RS10900 Genome accession   NZ_CP049978
Coordinates   2103513..2103848 (+) Length   111 a.a.
NCBI ID   WP_000982015.1    Uniprot ID   A0A9X7QJP1
Organism   Bacillus sp. RZ2MS9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2092184..2103848 2103513..2103848 within 0


Gene organization within MGE regions


Location: 2092184..2103848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHV55_RS27350 - 2092818..2094173 (+) 1356 Protein_2058 DEAD/DEAH box helicase family protein -
  BHV55_RS27740 (BHV55_10835) - 2094156..2094484 (+) 329 Protein_2059 hypothetical protein -
  BHV55_RS27745 (BHV55_10840) - 2094534..2094746 (+) 213 WP_341473470.1 hypothetical protein -
  BHV55_RS10845 (BHV55_10845) - 2094816..2095313 (+) 498 WP_070757444.1 phage holin family protein -
  BHV55_RS10850 (BHV55_10850) - 2095459..2095626 (+) 168 Protein_2062 N-acetylmuramoyl-L-alanine amidase -
  BHV55_RS10855 (BHV55_10855) - 2095691..2095906 (-) 216 WP_311315291.1 hypothetical protein -
  BHV55_RS10860 (BHV55_10860) - 2095976..2096629 (-) 654 WP_000724008.1 hypothetical protein -
  BHV55_RS10865 (BHV55_10865) - 2096984..2098084 (+) 1101 WP_000584829.1 aspartate phosphatase -
  BHV55_RS10870 (BHV55_10870) - 2098081..2098296 (+) 216 WP_000756629.1 hypothetical protein -
  BHV55_RS10875 (BHV55_10875) - 2098708..2099535 (-) 828 WP_070757438.1 hypothetical protein -
  BHV55_RS10880 (BHV55_10880) - 2099645..2100292 (+) 648 WP_070757436.1 HD domain-containing protein -
  BHV55_RS10885 (BHV55_10885) - 2100289..2102184 (+) 1896 WP_044584408.1 ABC-F family ATP-binding cassette domain-containing protein -
  BHV55_RS10890 (BHV55_10890) - 2102260..2102991 (+) 732 WP_001260655.1 Bax inhibitor-1/YccA family protein -
  BHV55_RS10895 (BHV55_10895) - 2103097..2103351 (+) 255 WP_000975131.1 DUF4318 domain-containing protein -
  BHV55_RS10900 (BHV55_10900) ssbA 2103513..2103848 (+) 336 WP_000982015.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12740.60 Da        Isoelectric Point: 9.7036

>NTDB_id=429101 BHV55_RS10900 WP_000982015.1 2103513..2103848(+) (ssbA) [Bacillus sp. RZ2MS9]
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRKSAENVAEYCKKGSLVGITGRIQTS
NYNDEQGKRIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=429101 BHV55_RS10900 WP_000982015.1 2103513..2103848(+) (ssbA) [Bacillus sp. RZ2MS9]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGTCGCTTATGC
ACGAATATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATTAATTGTGTCGTTT
GGCGCAAATCGGCTGAGAATGTAGCTGAATATTGTAAGAAGGGGTCGCTCGTTGGGATTACAGGGCGTATTCAGACTAGT
AATTACAATGATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.434

95.495

0.568
  ssb Latilactobacillus sakei subsp. sakei 23K

56.604

95.495

0.541
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.786

100

0.523
  ssbB Lactococcus lactis subsp. cremoris KW2

45.714

94.595

0.432
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

99.099

0.432
  ssbA Streptococcus mutans UA159

40.909

99.099

0.405
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae D39

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae R6

40

99.099

0.396
  ssbB/cilA Streptococcus mitis SK321

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae Rx1

40

99.099

0.396