Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   G7083_RS05960 Genome accession   NZ_CP049913
Coordinates   1227714..1228829 (-) Length   371 a.a.
NCBI ID   WP_166013970.1    Uniprot ID   A0A6G8D495
Organism   Vibrio sp. HDW18     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1222714..1233829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7083_RS05930 (G7083_05930) hemF 1223250..1224170 (-) 921 WP_166014998.1 oxygen-dependent coproporphyrinogen oxidase -
  G7083_RS05935 (G7083_05935) - 1224201..1224758 (-) 558 WP_166013965.1 L-threonylcarbamoyladenylate synthase -
  G7083_RS05940 (G7083_05940) purE 1224928..1225413 (+) 486 WP_166013966.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  G7083_RS05945 (G7083_05945) - 1225417..1226550 (+) 1134 WP_166013967.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  G7083_RS05950 (G7083_05950) - 1226639..1227223 (-) 585 WP_166013968.1 type I DNA topoisomerase -
  G7083_RS05955 (G7083_05955) - 1227235..1227711 (-) 477 WP_166013969.1 DUF494 family protein -
  G7083_RS05960 (G7083_05960) dprA 1227714..1228829 (-) 1116 WP_166013970.1 DNA-processing protein DprA Machinery gene
  G7083_RS05965 (G7083_05965) - 1228829..1229929 (-) 1101 WP_166013971.1 LysM peptidoglycan-binding domain-containing protein -
  G7083_RS05970 (G7083_05970) def 1230068..1230577 (+) 510 WP_206212121.1 peptide deformylase -
  G7083_RS05975 (G7083_05975) fmt 1230595..1231542 (+) 948 WP_166013973.1 methionyl-tRNA formyltransferase -
  G7083_RS05980 (G7083_05980) rsmB 1231597..1232877 (+) 1281 WP_166014999.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 39887.89 Da        Isoelectric Point: 7.5321

>NTDB_id=428598 G7083_RS05960 WP_166013970.1 1227714..1228829(-) (dprA) [Vibrio sp. HDW18]
MKDHDLATWLALCFTPKLGSRTLSYLLATQSPAQLSTFTPQQWLARGLKPEQLAFLTTRAAAQAEQSLLWRSAADHRYIV
TPHCSHYPRLLKEIAAPPPVLFIEGQLPALHDPALAIVGSRNASIDGRQIARQFAAELVQSGLVVVSGLALGIDGHAHDG
ALQAKGQTVAVLGSGLAQIYPKQHQALAERIIAQGALVSEFAPHAAPRADHFPRRNRIISGLSLGVVVVEAAEKSGSLIT
ARYAADQGREVFVVPGSIFNAASQGSNQLIRQGACLVQSVQQIYQELKNPLSWLLSEQASCQATLFCASHSDEELPFPEL
LANVGVEATPIDILASRTKIPVQEIMMQLLELELLGHVVAVPGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=428598 G7083_RS05960 WP_166013970.1 1227714..1228829(-) (dprA) [Vibrio sp. HDW18]
ATGAAGGATCACGATTTAGCCACTTGGCTAGCGCTGTGTTTTACCCCCAAGCTGGGGAGCAGAACACTCTCTTATCTATT
GGCTACTCAATCGCCAGCTCAGCTGTCAACCTTCACGCCTCAGCAATGGTTGGCGCGTGGCCTTAAACCAGAACAGTTAG
CCTTTTTAACCACTCGCGCCGCCGCGCAAGCTGAGCAGAGCTTGCTATGGCGTAGCGCTGCCGATCACCGCTACATAGTG
ACCCCACATTGCTCGCACTATCCTCGTCTATTGAAAGAAATTGCAGCGCCGCCTCCGGTGCTGTTTATCGAAGGTCAGTT
ACCCGCCTTGCACGATCCTGCACTGGCGATTGTCGGTAGCCGCAATGCCAGTATTGACGGACGACAAATTGCGCGTCAGT
TTGCGGCCGAGTTGGTTCAATCCGGGTTGGTGGTAGTCAGTGGATTAGCGCTCGGGATTGATGGACATGCGCATGATGGC
GCTTTGCAAGCCAAGGGGCAAACGGTGGCGGTATTGGGCTCTGGGTTAGCGCAAATCTACCCCAAACAGCATCAAGCTTT
GGCGGAGCGAATTATTGCCCAAGGCGCATTGGTTTCTGAGTTTGCACCGCATGCTGCACCGCGGGCCGATCACTTTCCAC
GCCGCAACCGTATCATTAGTGGTTTGTCACTGGGGGTGGTGGTCGTGGAAGCGGCGGAAAAAAGTGGTTCGCTGATCACC
GCCCGTTATGCTGCCGATCAAGGGCGTGAAGTTTTTGTGGTGCCCGGATCGATTTTCAACGCCGCCAGTCAGGGCAGTAA
TCAACTGATCCGACAAGGGGCGTGTTTAGTGCAAAGCGTGCAACAGATCTATCAGGAGCTCAAAAATCCACTCTCTTGGT
TACTCTCTGAACAAGCATCGTGCCAAGCGACACTTTTTTGTGCCAGCCACAGTGATGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGGGTAGAAGCTACACCCATTGATATTCTGGCAAGCCGGACTAAAATTCCGGTGCAGGAAATCATGAT
GCAGCTCTTGGAGTTAGAACTCCTTGGGCATGTGGTTGCAGTACCTGGTGGCTATATTAGAAAGGGGAGAGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(319-364)

DNA recombination-mediator protein A (DNA_processg_A)

(78-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8D495

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

85.714

100

0.857
  dprA Vibrio campbellii strain DS40M4

57.297

99.73

0.571
  dprA Legionella pneumophila strain ERS1305867

43.583

100

0.439
  dprA Haemophilus influenzae Rd KW20

41.039

100

0.426
  dprA Glaesserella parasuis strain SC1401

41.755

100

0.423
  dprA Acinetobacter baumannii D1279779

44.109

89.218

0.394
  dprA Neisseria meningitidis MC58

36.432

100

0.391
  dprA Neisseria meningitidis strain C311

36.432

100

0.391
  dprA Acinetobacter baumannii strain A118

43.243

89.757

0.388
  dprA Neisseria gonorrhoeae strain FA1090

35.859

100

0.383
  dprA Acinetobacter baylyi ADP1

38.275

100

0.383
  dprA Neisseria gonorrhoeae MS11

35.101

100

0.375