Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   G4D76_RS13580 Genome accession   NZ_CP049818
Coordinates   2352249..2352839 (+) Length   196 a.a.
NCBI ID   WP_250130336.1    Uniprot ID   -
Organism   Jeotgalicoccus sp. WY2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2347249..2357839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4D76_RS13560 ylqF 2347964..2348818 (+) 855 WP_213810151.1 ribosome biogenesis GTPase YlqF -
  G4D76_RS13565 - 2348826..2349578 (+) 753 WP_213810152.1 ribonuclease HII -
  G4D76_RS13570 sucC 2349799..2350968 (+) 1170 WP_026858408.1 ADP-forming succinate--CoA ligase subunit beta -
  G4D76_RS13575 sucD 2350986..2351894 (+) 909 WP_026858407.1 succinate--CoA ligase subunit alpha -
  G4D76_RS13580 dprA 2352249..2352839 (+) 591 WP_250130336.1 DNA-processing protein DprA Machinery gene
  G4D76_RS13585 topA 2352949..2355014 (+) 2066 Protein_2894 type I DNA topoisomerase -
  G4D76_RS13590 xerA 2355314..2356192 (+) 879 WP_256440597.1 site-specific tyrosine recombinase/integron integrase -
  G4D76_RS13595 hslV 2356197..2356724 (+) 528 WP_035784944.1 HslVU peptidase proteolytic subunit -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21706.70 Da        Isoelectric Point: 6.8743

>NTDB_id=428031 G4D76_RS13580 WP_250130336.1 2352249..2352839(+) (dprA) [Jeotgalicoccus sp. WY2]
MKEIYDFPYILYYRGNPRYLMEDMLGVVGSRKSTSYTAKSLEVLLPSLKNIAIISGLAYGADEAAHKTAIGNNMKTIGVL
AFGHSTHYPKTTADIRREMEQSHLTISEYPPDTPIRKWQFVARNRIIAGSARGVLVTEAEEKSGSLITLEMALDDNRNAY
CLPGNITSALSKGTNLRIKEGASVVTEADDIQRDFD

Nucleotide


Download         Length: 591 bp        

>NTDB_id=428031 G4D76_RS13580 WP_250130336.1 2352249..2352839(+) (dprA) [Jeotgalicoccus sp. WY2]
CTGAAAGAAATTTATGATTTTCCCTACATATTATATTACCGCGGAAACCCCAGGTACTTAATGGAAGATATGCTCGGTGT
CGTTGGCAGCAGAAAATCGACAAGCTATACAGCTAAATCTCTGGAGGTGCTCTTGCCGAGTCTTAAAAACATTGCTATTA
TATCAGGACTTGCCTACGGTGCGGATGAAGCGGCACACAAGACGGCAATCGGCAATAATATGAAGACGATTGGTGTGCTT
GCATTCGGGCACAGTACACACTATCCAAAAACAACTGCGGATATCCGCCGGGAGATGGAACAGAGTCATCTGACAATCAG
CGAATATCCGCCGGACACACCAATCCGGAAATGGCAGTTCGTTGCACGCAATAGAATTATTGCCGGCTCTGCCCGAGGTG
TCCTTGTAACAGAAGCGGAAGAAAAAAGCGGCAGTTTAATTACGCTTGAGATGGCACTCGACGATAACCGGAACGCATAC
TGTCTGCCGGGAAATATTACATCCGCACTGTCAAAAGGAACAAATTTACGTATAAAAGAAGGCGCATCAGTTGTGACAGA
AGCAGATGATATTCAGAGAGATTTCGACTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(2-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

54.774

100

0.556
  dprA Staphylococcus aureus N315

54.774

100

0.556
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

43.655

100

0.439
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

43.655

100

0.439
  dprA/cilB/dalA Streptococcus pneumoniae D39

43.655

100

0.439
  dprA/cilB/dalA Streptococcus pneumoniae R6

43.655

100

0.439
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

43.655

100

0.439
  dprA/cilB/dalA Streptococcus mitis SK321

43.655

100

0.439
  dprA Latilactobacillus sakei subsp. sakei 23K

45.355

93.367

0.423
  dprA Lactococcus lactis subsp. cremoris KW2

39.286

100

0.393
  dprA Streptococcus mutans UA159

39.086

100

0.393
  dprA Haemophilus influenzae Rd KW20

38.462

99.49

0.383
  dprA Legionella pneumophila strain ERS1305867

37.755

100

0.378
  dprA Bacillus subtilis subsp. subtilis str. 168

37.113

98.98

0.367
  dprA Acinetobacter baumannii D1279779

36.598

98.98

0.362