Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GTQ41_RS22845 Genome accession   NZ_CP049737
Coordinates   5056901..5058118 (+) Length   405 a.a.
NCBI ID   WP_047296619.1    Uniprot ID   -
Organism   Pseudomonas sp. AN-B15     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5051901..5063118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTQ41_RS22825 (GTQ41_22850) - 5053348..5053644 (+) 297 WP_041065375.1 DUF2845 domain-containing protein -
  GTQ41_RS22830 (GTQ41_22855) - 5053878..5054234 (-) 357 WP_007963876.1 BON domain-containing protein -
  GTQ41_RS22835 (GTQ41_22860) pilA 5054532..5054969 (-) 438 WP_047296615.1 pilin Machinery gene
  GTQ41_RS22840 (GTQ41_22865) pilB 5055198..5056898 (+) 1701 WP_047296617.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GTQ41_RS22845 (GTQ41_22870) pilC 5056901..5058118 (+) 1218 WP_047296619.1 type II secretion system F family protein Machinery gene
  GTQ41_RS22850 (GTQ41_22875) pilD 5058120..5058992 (+) 873 WP_047296621.1 A24 family peptidase Machinery gene
  GTQ41_RS22855 (GTQ41_22880) coaE 5058989..5059612 (+) 624 WP_047296622.1 dephospho-CoA kinase -
  GTQ41_RS22860 (GTQ41_22885) yacG 5059609..5059809 (+) 201 WP_007963861.1 DNA gyrase inhibitor YacG -
  GTQ41_RS22865 (GTQ41_22890) - 5059816..5060031 (-) 216 WP_041065358.1 hypothetical protein -
  GTQ41_RS22870 (GTQ41_22895) - 5060097..5060786 (-) 690 WP_047296624.1 energy-coupling factor ABC transporter permease -
  GTQ41_RS22875 (GTQ41_22900) - 5060783..5061250 (-) 468 WP_047296911.1 hypothetical protein -
  GTQ41_RS22880 (GTQ41_22905) - 5061380..5062006 (+) 627 WP_003228301.1 DUF1780 domain-containing protein -
  GTQ41_RS22885 (GTQ41_22910) - 5062003..5062530 (+) 528 WP_041065352.1 MOSC domain-containing protein -
  GTQ41_RS22890 (GTQ41_22915) - 5062582..5062755 (+) 174 WP_003228304.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43986.81 Da        Isoelectric Point: 10.0979

>NTDB_id=427423 GTQ41_RS22845 WP_047296619.1 5056901..5058118(+) (pilC) [Pseudomonas sp. AN-B15]
MAVKAAKISIYAWEGTDRKGSKVTGELSGQNPALIKAQLRKQGINPGKVRKKSTSLLSLGKRIKAQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPAMRKLVDEVKQEVAAGNSFAAALRKKPQYFDELYCNLVDAGEQSGALDTLLERVATYKEKS
EALKAKIKKAMTYPTAVVLVAMVVTGILLVKVVPQFQAVFSGFGAELPAFTLMVISISEFMQQWWWAVLGALIAAVFGIR
HALKKSQALRDRKDTWLLKLPLVGTLMYKSAVARFARTLSTTFAAGVPLVEALDSVAGATGNVVFKRAVLRIRQDVATGM
QLNFSMRSTGVFPNMAVQMTAIGEESGALDDMLDKVAGFYEDEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=427423 GTQ41_RS22845 WP_047296619.1 5056901..5058118(+) (pilC) [Pseudomonas sp. AN-B15]
ATGGCGGTCAAGGCAGCGAAAATCAGCATCTACGCCTGGGAAGGCACGGATCGCAAAGGCAGCAAGGTCACGGGCGAGTT
GAGCGGGCAGAACCCTGCGCTGATCAAGGCCCAGCTGCGCAAACAAGGCATCAACCCCGGCAAGGTGCGCAAGAAATCCA
CCTCCTTGCTCAGCCTCGGCAAACGCATCAAGGCCCAGGACATCGCCCTGTTCACCCGGCAGATGGCAACCATGATGAAG
GCTGGCGTGCCGTTGTTGCAGTCGTTCGACATCATTGGCGAAGGCTTCGACAACCCGGCGATGCGCAAACTGGTGGACGA
AGTGAAGCAAGAGGTGGCGGCCGGCAACAGCTTCGCCGCCGCCCTGCGCAAGAAGCCGCAGTATTTCGATGAGCTGTATT
GCAACCTGGTGGATGCCGGCGAGCAATCCGGTGCACTCGATACGTTGCTCGAACGAGTCGCAACCTATAAGGAAAAAAGC
GAAGCGCTCAAGGCCAAGATCAAGAAAGCCATGACCTACCCCACAGCCGTGGTGCTGGTGGCGATGGTGGTCACGGGGAT
TTTGCTGGTGAAAGTGGTGCCGCAGTTTCAGGCGGTATTTTCCGGTTTTGGCGCTGAACTGCCGGCCTTCACGCTGATGG
TGATCAGTATCTCCGAGTTCATGCAGCAATGGTGGTGGGCGGTGCTCGGCGCCCTGATTGCAGCAGTGTTCGGCATCCGT
CATGCACTGAAAAAATCCCAGGCGTTGCGCGACCGTAAAGACACCTGGCTGCTGAAGCTGCCGCTGGTGGGTACGCTGAT
GTACAAATCGGCGGTGGCGCGATTCGCCCGCACCTTGTCGACCACCTTCGCCGCTGGCGTACCGCTGGTGGAGGCACTGG
ATTCGGTGGCCGGCGCCACCGGCAACGTGGTGTTCAAACGTGCAGTGCTGCGTATCCGCCAGGACGTCGCCACCGGTATG
CAGCTGAATTTTTCCATGCGCAGCACCGGGGTGTTCCCGAACATGGCGGTACAGATGACCGCGATCGGTGAGGAATCGGG
CGCGCTGGATGACATGCTCGACAAGGTCGCCGGTTTTTATGAGGACGAAGTGGATAACATGGTCGACAACCTCACCAGCC
TGATGGAGCCGTTCATCATGGTGGTGCTCGGGGTCATCGTCGGCGGGCTGGTCGTGGCCATGTACCTGCCGATTTTCCAG
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

74.568

100

0.746
  pilC Acinetobacter baumannii D1279779

59.069

100

0.595
  pilC Acinetobacter baylyi ADP1

58.578

100

0.59
  pilC Legionella pneumophila strain ERS1305867

53.788

97.778

0.526
  pilG Neisseria gonorrhoeae MS11

44.03

99.259

0.437
  pilC Vibrio cholerae strain A1552

44.444

97.778

0.435
  pilG Neisseria meningitidis 44/76-A

43.532

99.259

0.432
  pilC Vibrio campbellii strain DS40M4

41.133

100

0.412
  pilC Thermus thermophilus HB27

38.404

99.012

0.38