Detailed information NTG0427424

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GTQ41_RS22850
• Genome accession: NZ_CP049737
• Coordinates: 5058120..5058992 (+)
• Length: 290 a.a.
• NCBI ID: WP_047296621.1
• Uniprot ID: -
• Organism: Pseudomonas sp. AN-B15
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5053120..5063992

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GTQ41_RS22825 (GTQ41_22850)	-	5053348..5053644 (+)	297	WP_041065375.1	DUF2845 domain-containing protein	-
GTQ41_RS22830 (GTQ41_22855)	-	5053878..5054234 (-)	357	WP_007963876.1	BON domain-containing protein	-
GTQ41_RS22835 (GTQ41_22860)	pilA	5054532..5054969 (-)	438	WP_047296615.1	pilin	Machinery gene
GTQ41_RS22840 (GTQ41_22865)	pilB	5055198..5056898 (+)	1701	WP_047296617.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GTQ41_RS22845 (GTQ41_22870)	pilC	5056901..5058118 (+)	1218	WP_047296619.1	type II secretion system F family protein	Machinery gene
GTQ41_RS22850 (GTQ41_22875)	pilD	5058120..5058992 (+)	873	WP_047296621.1	A24 family peptidase	Machinery gene
GTQ41_RS22855 (GTQ41_22880)	coaE	5058989..5059612 (+)	624	WP_047296622.1	dephospho-CoA kinase	-
GTQ41_RS22860 (GTQ41_22885)	yacG	5059609..5059809 (+)	201	WP_007963861.1	DNA gyrase inhibitor YacG	-
GTQ41_RS22865 (GTQ41_22890)	-	5059816..5060031 (-)	216	WP_041065358.1	hypothetical protein	-
GTQ41_RS22870 (GTQ41_22895)	-	5060097..5060786 (-)	690	WP_047296624.1	energy-coupling factor ABC transporter permease	-
GTQ41_RS22875 (GTQ41_22900)	-	5060783..5061250 (-)	468	WP_047296911.1	hypothetical protein	-
GTQ41_RS22880 (GTQ41_22905)	-	5061380..5062006 (+)	627	WP_003228301.1	DUF1780 domain-containing protein	-
GTQ41_RS22885 (GTQ41_22910)	-	5062003..5062530 (+)	528	WP_041065352.1	MOSC domain-containing protein	-
GTQ41_RS22890 (GTQ41_22915)	-	5062582..5062755 (+)	174	WP_003228304.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32190.51 Da
• Isoelectric Point: 8.2491

>NTDB_id=427424 GTQ41_RS22850 WP_047296621.1 5058120..5058992(+) (pilD) [Pseudomonas sp. AN-B15]
MPIDQLFSLYPLAFVCTALLLGLVVGSFLNVLVWRLPKMLERDWRQQAQDVLGLPSETPLPTYNLMLPHSQCPHCGHRIR
PWENIPLLSYLLLRGRCSACTAPISKRYPLTELACGLLSAFVAWHLGFGWPAGLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVSLHAALWGAVAGYMALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIVGVILLRLREQKTSTPMPFGPYLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=427424 GTQ41_RS22850 WP_047296621.1 5058120..5058992(+) (pilD) [Pseudomonas sp. AN-B15]
ATGCCTATCGACCAACTCTTCAGTCTGTATCCGCTGGCCTTTGTGTGCACCGCCCTGCTGCTGGGTCTGGTGGTGGGCAG
TTTCCTCAACGTGCTGGTCTGGCGCCTGCCGAAAATGCTCGAGCGCGATTGGCGCCAGCAGGCACAGGACGTCCTCGGCC
TGCCGAGCGAAACGCCACTGCCGACCTACAACCTGATGCTGCCGCACTCCCAGTGTCCGCACTGCGGCCACCGGATTCGG
CCGTGGGAAAACATTCCGCTGCTCAGCTACCTGTTGCTGCGCGGACGCTGTTCGGCGTGTACCGCCCCGATCAGCAAACG
TTATCCCCTGACCGAACTGGCTTGCGGCCTGCTCTCGGCATTCGTCGCCTGGCACCTGGGTTTCGGCTGGCCGGCCGGCT
TGTTGATCGTCCTCACCTGGGGCCTGCTGGCGATGAGCCTGATCGACACCGAACATCAGTTGCTGCCCGATGTACTGGTG
TTGCCGTTGTTGTGGCTGGGGTTGATCGTCAACAGCTTCGGGCTGTTCGTCTCGCTACACGCCGCGCTGTGGGGCGCGGT
GGCCGGCTACATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTGACCGGCAAGGACGGCATCGGCCACGGCGACT
TCAAACTGCTGGCGCTGCTCGGGGCCTGGGGCGGCTGGCAGATTCTGCCGCTGACGATTCTGCTGTCGTCGCTGGTGGGG
GCGATTGTCGGGGTGATTCTGCTGCGGCTGCGTGAGCAGAAAACCTCGACGCCGATGCCCTTCGGCCCGTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.546	97.241	0.521
pilD	Vibrio campbellii strain DS40M4	52.128	97.241	0.507
pilD	Acinetobacter baumannii D1279779	49.813	92.069	0.459
pilD	Acinetobacter nosocomialis M2	49.813	92.069	0.459
pilD	Neisseria gonorrhoeae MS11	48.889	93.103	0.455