Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | GYO_RS40590 | Genome accession | NC_016047 |
| Coordinates | 3711285..3711626 (-) | Length | 113 a.a. |
| NCBI ID | WP_014115447.1 | Uniprot ID | A0A9Q4HGB8 |
| Organism | Bacillus spizizenii TU-B-10 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3706285..3716626
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GYO_RS40575 (GYO_3990) | - | 3706523..3709291 (+) | 2769 | WP_014115443.1 | DEAD/DEAH box helicase | - |
| GYO_RS40580 (GYO_3992) | ywpJ | 3709421..3710278 (-) | 858 | WP_014115445.1 | phosphatase YwpJ | - |
| GYO_RS40585 (GYO_3993) | glcR | 3710284..3711060 (-) | 777 | WP_014115446.1 | transcriptional regulator GlcR | - |
| GYO_RS40590 (GYO_3994) | ssbB | 3711285..3711626 (-) | 342 | WP_014115447.1 | single-stranded DNA-binding protein SsbB | Machinery gene |
| GYO_RS40595 (GYO_3995) | ywpG | 3711703..3712086 (-) | 384 | WP_014115448.1 | DynA interaction protein YwpG | - |
| GYO_RS40600 (GYO_3996) | - | 3712263..3712673 (+) | 411 | WP_041521204.1 | YwpF-like family protein | - |
| GYO_RS43985 (GYO_3997) | - | 3712815..3713453 (-) | 639 | WP_014115450.1 | class A sortase | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 12463.14 Da Isoelectric Point: 7.8150
>NTDB_id=42619 GYO_RS40590 WP_014115447.1 3711285..3711626(-) (ssbB) [Bacillus spizizenii TU-B-10]
MFNQVMLVGRLTKDPELRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVTVYVTEVLADTVRFMDPKPREKAAD
MFNQVMLVGRLTKDPELRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVTVYVTEVLADTVRFMDPKPREKAAD
Nucleotide
Download Length: 342 bp
>NTDB_id=42619 GYO_RS40590 WP_014115447.1 3711285..3711626(-) (ssbB) [Bacillus spizizenii TU-B-10]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGAGCTTCGCTACACTTCCGCCGGTGCGGCAGTCGC
ACACGTTACGCTCGCGGTAAATCGCAGCTTCAAAAATGCTTCAGGTGAAATCGAGGCCGACTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTTGTCGGCGTAAGCGGGCGGATTCAGACAAGA
AGCTATGAAAACGCAGAAGGCGTTACCGTATATGTAACGGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCCGATTGA
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGAGCTTCGCTACACTTCCGCCGGTGCGGCAGTCGC
ACACGTTACGCTCGCGGTAAATCGCAGCTTCAAAAATGCTTCAGGTGAAATCGAGGCCGACTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTTGTCGGCGTAAGCGGGCGGATTCAGACAAGA
AGCTATGAAAACGCAGAAGGCGTTACCGTATATGTAACGGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCCGATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
97.345 |
100 |
0.973 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.094 |
93.805 |
0.611 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.491 |
93.805 |
0.549 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
48.113 |
93.805 |
0.451 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
45.37 |
95.575 |
0.434 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
45.37 |
95.575 |
0.434 |
| ssbA | Streptococcus mutans UA159 |
46.226 |
93.805 |
0.434 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus mitis SK321 |
44.444 |
95.575 |
0.425 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
42.857 |
92.92 |
0.398 |