Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | XACM_RS15465 | Genome accession | NC_016010 |
| Coordinates | 3634898..3635308 (-) | Length | 136 a.a. |
| NCBI ID | WP_014090855.1 | Uniprot ID | - |
| Organism | Xanthomonas euvesicatoria pv. citrumelo F1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3629898..3640308
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XACM_RS15450 (XACM_3136) | pilR | 3630841..3632295 (+) | 1455 | WP_011348337.1 | sigma-54 dependent transcriptional regulator | Regulator |
| XACM_RS15455 (XACM_3137) | pilB | 3632524..3634260 (-) | 1737 | WP_014090854.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| XACM_RS22200 | - | 3634303..3634713 (-) | 411 | WP_029820067.1 | pilin | - |
| XACM_RS15465 (XACM_3138) | pilA | 3634898..3635308 (-) | 411 | WP_014090855.1 | pilin | Machinery gene |
| XACM_RS15470 (XACM_3139) | pilC | 3635642..3636898 (+) | 1257 | WP_014090856.1 | type II secretion system F family protein | Machinery gene |
| XACM_RS15475 (XACM_3140) | - | 3636905..3637768 (+) | 864 | WP_008576868.1 | A24 family peptidase | - |
| XACM_RS15480 (XACM_3141) | coaE | 3637782..3638387 (+) | 606 | WP_014090857.1 | dephospho-CoA kinase | - |
| XACM_RS15485 (XACM_3142) | - | 3638459..3639793 (-) | 1335 | WP_014090858.1 | HAMP domain-containing sensor histidine kinase | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 14259.63 Da Isoelectric Point: 7.5864
>NTDB_id=42395 XACM_RS15465 WP_014090855.1 3634898..3635308(-) (pilA) [Xanthomonas euvesicatoria pv. citrumelo F1]
MKKQNGFTLIELMIVIAIIAILAAIALPMYQDYVAKSQVTAGLAEINPGKTQYEVALNEGKTAVADITELGLKSPSERCT
IAPITALSATGTIECTLKGNTQVVGEKVTLTRATDGTWTCKTDALKKYAPAGCPGA
MKKQNGFTLIELMIVIAIIAILAAIALPMYQDYVAKSQVTAGLAEINPGKTQYEVALNEGKTAVADITELGLKSPSERCT
IAPITALSATGTIECTLKGNTQVVGEKVTLTRATDGTWTCKTDALKKYAPAGCPGA
Nucleotide
Download Length: 411 bp
>NTDB_id=42395 XACM_RS15465 WP_014090855.1 3634898..3635308(-) (pilA) [Xanthomonas euvesicatoria pv. citrumelo F1]
ATGAAGAAGCAAAACGGTTTTACGCTGATCGAACTTATGATCGTCATTGCAATCATCGCGATTCTGGCTGCGATTGCCCT
GCCGATGTATCAGGACTACGTCGCCAAGTCGCAGGTCACCGCCGGTCTCGCTGAAATCAATCCTGGCAAGACGCAGTACG
AAGTAGCGCTAAACGAAGGCAAGACTGCCGTTGCAGACATCACCGAGCTGGGTCTGAAGTCTCCTTCTGAGCGCTGCACC
ATTGCGCCGATCACCGCTCTGAGCGCTACCGGCACCATCGAGTGCACTCTGAAGGGGAATACGCAGGTTGTGGGTGAGAA
GGTCACGCTGACCCGTGCAACTGATGGTACCTGGACCTGCAAGACGGACGCGCTGAAGAAGTACGCGCCTGCTGGCTGCC
CGGGTGCTTAA
ATGAAGAAGCAAAACGGTTTTACGCTGATCGAACTTATGATCGTCATTGCAATCATCGCGATTCTGGCTGCGATTGCCCT
GCCGATGTATCAGGACTACGTCGCCAAGTCGCAGGTCACCGCCGGTCTCGCTGAAATCAATCCTGGCAAGACGCAGTACG
AAGTAGCGCTAAACGAAGGCAAGACTGCCGTTGCAGACATCACCGAGCTGGGTCTGAAGTCTCCTTCTGAGCGCTGCACC
ATTGCGCCGATCACCGCTCTGAGCGCTACCGGCACCATCGAGTGCACTCTGAAGGGGAATACGCAGGTTGTGGGTGAGAA
GGTCACGCTGACCCGTGCAACTGATGGTACCTGGACCTGCAAGACGGACGCGCTGAAGAAGTACGCGCCTGCTGGCTGCC
CGGGTGCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter baumannii strain A118 |
50.365 |
100 |
0.507 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
49.63 |
99.265 |
0.493 |
| pilA | Pseudomonas aeruginosa PAK |
43.243 |
100 |
0.471 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.844 |
100 |
0.434 |
| pilA | Vibrio cholerae strain A1552 |
41.844 |
100 |
0.434 |
| pilA | Vibrio cholerae C6706 |
41.844 |
100 |
0.434 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
43.284 |
98.529 |
0.426 |
| comP | Acinetobacter baylyi ADP1 |
38.926 |
100 |
0.426 |
| pilA2 | Legionella pneumophila str. Paris |
41.912 |
100 |
0.419 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
40.441 |
100 |
0.404 |