Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   G4P54_RS18725 Genome accession   NZ_CP048852
Coordinates   3562444..3562785 (-) Length   113 a.a.
NCBI ID   WP_167873507.1    Uniprot ID   A0A6H0WM97
Organism   Bacillus tequilensis strain EA-CB0015     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3557444..3567785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4P54_RS18710 (G4P54_18660) - 3557697..3560465 (+) 2769 WP_167873505.1 DEAD/DEAH box helicase -
  G4P54_RS18715 (G4P54_18665) - 3560590..3561447 (-) 858 WP_167873506.1 Cof-type HAD-IIB family hydrolase -
  G4P54_RS18720 (G4P54_18670) glcR 3561453..3562226 (-) 774 WP_024713745.1 transcriptional regulator GlcR -
  G4P54_RS18725 (G4P54_18675) ssbB 3562444..3562785 (-) 342 WP_167873507.1 single-stranded DNA-binding protein SsbB Machinery gene
  G4P54_RS18730 (G4P54_18680) - 3562862..3563245 (-) 384 WP_024713747.1 hypothetical protein -
  G4P54_RS18735 (G4P54_18685) - 3563419..3563829 (+) 411 WP_003227794.1 YwpF-like family protein -
  G4P54_RS18740 (G4P54_18690) mscL 3564281..3564676 (-) 396 WP_024713749.1 large conductance mechanosensitive channel protein MscL -
  G4P54_RS18745 (G4P54_18695) fabZ 3564751..3565176 (-) 426 WP_024713750.1 3-hydroxyacyl-ACP dehydratase FabZ -
  G4P54_RS18750 (G4P54_18700) - 3565368..3566432 (+) 1065 WP_167873508.1 tetratricopeptide repeat protein -
  G4P54_RS18755 (G4P54_18705) flhP 3566453..3567262 (-) 810 WP_024713752.1 flagellar hook-basal body complex protein FlhP -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12450.05 Da        Isoelectric Point: 7.8150

>NTDB_id=423596 G4P54_RS18725 WP_167873507.1 3562444..3562785(-) (ssbB) [Bacillus tequilensis strain EA-CB0015]
MFNQVMLVGRLTKDPELRYTSAGGAVAHVTLAVNRSFKNASGETEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=423596 G4P54_RS18725 WP_167873507.1 3562444..3562785(-) (ssbB) [Bacillus tequilensis strain EA-CB0015]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTAACAAAAGATCCTGAGCTTCGCTACACTTCCGCCGGTGGGGCAGTTGC
GCACGTTACGCTTGCGGTAAACCGCAGCTTCAAAAATGCTTCAGGGGAAACCGAGGCCGATTACGTCAATTGCACGCTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGAAGAATTCAGACAAGG
AGCTATGAAAATGCAGAAGGTGTTAACGTCTATGTAACAGAAGTGCTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCCGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6H0WM97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

96.46

100

0.965
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

57.547

93.805

0.54
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.296

95.575

0.442
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.37

95.575

0.434
  ssbB/cilA Streptococcus mitis NCTC 12261

45.37

95.575

0.434
  ssbA Streptococcus mutans UA159

45.283

93.805

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae D39

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae R6

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis SK321

44.444

95.575

0.425
  ssbB Lactococcus lactis subsp. cremoris KW2

42.857

92.92

0.398