Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   G0029_RS14130 Genome accession   NZ_CP048670
Coordinates   2902546..2903001 (+) Length   151 a.a.
NCBI ID   WP_180109843.1    Uniprot ID   A0A7S6W5B3
Organism   Acinetobacter sp. YH12138 strain YH12138_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2897546..2908001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0029_RS14105 (G0029_14085) - 2898957..2899340 (+) 384 WP_078189365.1 RidA family protein -
  G0029_RS14110 (G0029_14090) - 2899559..2899753 (+) 195 WP_078192519.1 bacterioferritin-associated ferredoxin -
  G0029_RS14115 (G0029_14095) bfr 2900011..2900475 (+) 465 WP_180109842.1 heteropolymeric bacterioferritin subunit Bfr -
  G0029_RS14120 (G0029_14100) tfpZ 2900520..2901242 (-) 723 WP_180106980.1 TfpX/TfpZ family type IV pilin accessory protein -
  G0029_RS14125 (G0029_14105) - 2901313..2901765 (-) 453 WP_180106978.1 pilin -
  G0029_RS18310 - 2902009..2902212 (-) 204 WP_200232518.1 hypothetical protein -
  G0029_RS14130 (G0029_14110) pilA 2902546..2903001 (+) 456 WP_180109843.1 pilin Machinery gene
  G0029_RS14135 (G0029_14115) - 2903023..2903379 (-) 357 WP_180109844.1 hypothetical protein -
  G0029_RS14140 (G0029_14120) - 2903383..2905440 (-) 2058 WP_180109845.1 hypothetical protein -
  G0029_RS14145 (G0029_14125) - 2905437..2907374 (-) 1938 WP_180109846.1 hypothetical protein -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 15447.79 Da        Isoelectric Point: 6.2449

>NTDB_id=422204 G0029_RS14130 WP_180109843.1 2902546..2903001(+) (pilA) [Acinetobacter sp. YH12138 strain YH12138_T]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQDYIARSQVSEAFAITSAQKTAIAEYAQNNGAYPTADTKPAVADLAVGGT
YADSAVTASTGVITVTMKAVGTVNAKVAGKEIVLTPPADLAAAGNSFNFTCTSKGDKGMPQKYLPKACEGL

Nucleotide


Download         Length: 456 bp        

>NTDB_id=422204 G0029_RS14130 WP_180109843.1 2902546..2903001(+) (pilA) [Acinetobacter sp. YH12138 strain YH12138_T]
ATGAACGCTCAAAAAGGCTTTACGCTCATCGAGTTGATGATTGTTGTCGCTATTATTGGTATTTTGGCTGCAATTGCGAT
TCCTGCTTATCAAGATTATATTGCTCGCTCCCAAGTATCAGAAGCATTTGCAATCACTTCAGCACAAAAAACTGCAATTG
CTGAATATGCACAAAATAATGGTGCTTACCCTACTGCTGATACTAAGCCAGCAGTTGCAGATCTGGCAGTCGGAGGAACA
TATGCTGATTCTGCAGTAACAGCTTCAACAGGTGTAATTACAGTAACCATGAAAGCAGTTGGAACTGTAAATGCTAAAGT
TGCAGGCAAAGAAATTGTTTTAACACCACCTGCTGATTTAGCAGCAGCGGGTAACTCTTTTAACTTTACTTGTACTAGCA
AAGGTGATAAAGGAATGCCACAGAAGTACTTACCTAAAGCTTGTGAAGGTCTTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S6W5B3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter baumannii strain A118

49.342

100

0.497
  comP Acinetobacter baylyi ADP1

44.586

100

0.464
  pilA Pseudomonas aeruginosa PAK

42.857

100

0.457
  pilE Neisseria gonorrhoeae MS11

41.212

100

0.45
  pilE Neisseria gonorrhoeae strain FA1090

40.854

100

0.444
  pilA2 Legionella pneumophila str. Paris

42.581

100

0.437
  pilA/pilA1 Eikenella corrodens VA1

40

100

0.424
  pilA2 Legionella pneumophila strain ERS1305867

41.29

100

0.424
  pilA/pilAI Pseudomonas stutzeri DSM 10701

42.177

97.351

0.411
  pilA Acinetobacter nosocomialis M2

53.448

76.821

0.411
  pilA Ralstonia pseudosolanacearum GMI1000

35.26

100

0.404

Multiple sequence alignment