Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SPPN_RS05365 Genome accession   NC_015875
Coordinates   1019973..1020368 (+) Length   131 a.a.
NCBI ID   WP_000609556.1    Uniprot ID   -
Organism   Streptococcus pseudopneumoniae IS7493     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1001452..1024212 1019973..1020368 within 0


Gene organization within MGE regions


Location: 1001452..1024212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPPN_RS05235 (SPPN_05255) pcrA 1001871..1004162 (+) 2292 WP_000992846.1 DNA helicase PcrA -
  SPPN_RS05240 (SPPN_05260) radC 1004205..1004885 (+) 681 WP_000286919.1 RadC family protein -
  SPPN_RS05245 (SPPN_05265) - 1004882..1005571 (-) 690 WP_000743342.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  SPPN_RS05250 (SPPN_05270) - 1005589..1006230 (-) 642 WP_000653401.1 redox-sensing transcriptional repressor Rex -
  SPPN_RS05255 (SPPN_05275) - 1006313..1006528 (-) 216 WP_000462493.1 DUF4649 family protein -
  SPPN_RS05260 (SPPN_05280) - 1006536..1006883 (-) 348 WP_000863540.1 DUF1831 domain-containing protein -
  SPPN_RS05265 (SPPN_05285) - 1006888..1008003 (-) 1116 WP_000639687.1 cysteine desulfurase family protein -
  SPPN_RS05270 (SPPN_05290) - 1008013..1008972 (-) 960 WP_001283809.1 ribose-phosphate diphosphokinase -
  SPPN_RS05275 (SPPN_05295) - 1009085..1009654 (-) 570 WP_000681273.1 CYTH domain-containing protein -
  SPPN_RS05280 (SPPN_05300) - 1009787..1010932 (-) 1146 WP_000592966.1 site-specific integrase -
  SPPN_RS05285 (SPPN_05305) - 1011256..1012020 (-) 765 WP_001031294.1 hypothetical protein -
  SPPN_RS05290 (SPPN_05310) - 1012022..1012825 (-) 804 WP_000427977.1 XRE family transcriptional regulator -
  SPPN_RS13180 (SPPN_05315) - 1013006..1013152 (+) 147 WP_014017253.1 hypothetical protein -
  SPPN_RS05295 (SPPN_05320) - 1013350..1013550 (+) 201 WP_001125883.1 helix-turn-helix transcriptional regulator -
  SPPN_RS05300 (SPPN_05325) - 1013701..1013886 (+) 186 WP_000274132.1 helix-turn-helix domain-containing protein -
  SPPN_RS05305 (SPPN_05330) - 1013898..1014095 (+) 198 WP_001057655.1 hypothetical protein -
  SPPN_RS13405 (SPPN_05335) - 1014107..1014247 (+) 141 WP_000993374.1 hypothetical protein -
  SPPN_RS05310 (SPPN_05340) - 1014273..1014680 (-) 408 WP_001118395.1 hypothetical protein -
  SPPN_RS13410 (SPPN_05345) - 1014869..1015021 (+) 153 WP_001284486.1 hypothetical protein -
  SPPN_RS05315 (SPPN_05350) - 1015061..1015321 (+) 261 WP_000097024.1 hypothetical protein -
  SPPN_RS05320 (SPPN_05355) - 1015368..1016078 (+) 711 WP_001002367.1 ORF6C domain-containing protein -
  SPPN_RS05325 (SPPN_05360) - 1016210..1016434 (-) 225 WP_000040990.1 hypothetical protein -
  SPPN_RS13415 (SPPN_05365) - 1016550..1016693 (+) 144 WP_000389586.1 hypothetical protein -
  SPPN_RS05330 (SPPN_05370) - 1016797..1017087 (+) 291 WP_000398534.1 hypothetical protein -
  SPPN_RS05335 (SPPN_05375) - 1017100..1017423 (+) 324 WP_000462821.1 hypothetical protein -
  SPPN_RS05340 (SPPN_05380) - 1017436..1017732 (+) 297 WP_000391808.1 hypothetical protein -
  SPPN_RS05345 (SPPN_05385) - 1017725..1018540 (+) 816 WP_001289774.1 phage replisome organizer N-terminal domain-containing protein -
  SPPN_RS13420 (SPPN_05390) - 1018528..1018686 (+) 159 WP_000511763.1 hypothetical protein -
  SPPN_RS05350 (SPPN_05395) - 1018680..1019450 (+) 771 WP_000228207.1 ATP-binding protein -
  SPPN_RS05355 (SPPN_05400) - 1019465..1019659 (+) 195 WP_000470300.1 hypothetical protein -
  SPPN_RS05360 (SPPN_05405) - 1019659..1019886 (+) 228 WP_000891964.1 hypothetical protein -
  SPPN_RS05365 (SPPN_05415) ssb 1019973..1020368 (+) 396 WP_000609556.1 single-stranded DNA-binding protein Machinery gene
  SPPN_RS05370 (SPPN_05420) - 1020384..1020710 (+) 327 WP_000395494.1 phage holin -
  SPPN_RS05375 (SPPN_05425) - 1020713..1021669 (+) 957 WP_000350543.1 N-acetylmuramoyl-L-alanine amidase family protein -
  SPPN_RS05380 (SPPN_05435) - 1021846..1022052 (+) 207 WP_000917045.1 hypothetical protein -
  SPPN_RS05385 (SPPN_05440) - 1022036..1022467 (+) 432 WP_000379281.1 DUF2335 domain-containing protein -
  SPPN_RS05390 (SPPN_05445) - 1022654..1022842 (-) 189 WP_000109850.1 hypothetical protein -
  SPPN_RS05395 (SPPN_05455) - 1023541..1024212 (+) 672 WP_000171679.1 GTP pyrophosphokinase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15047.90 Da        Isoelectric Point: 5.0192

>NTDB_id=41996 SPPN_RS05365 WP_000609556.1 1019973..1020368(+) (ssb) [Streptococcus pseudopneumoniae IS7493]
MINNVTLVGRLTKDPELKHTPSNVAVATFTLAVNRNFKGANGEREADFINCMMWRKQAELFAEWCKKGNLVGVTGRIQTR
NYENQEGRRVYLTEVVADGFERLEKRDDTANRSNIEEQMPGYALEEDDFPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=41996 SPPN_RS05365 WP_000609556.1 1019973..1020368(+) (ssb) [Streptococcus pseudopneumoniae IS7493]
ATGATTAATAATGTTACGTTAGTGGGGCGCTTGACGAAAGACCCTGAATTAAAACATACACCGTCGAATGTGGCGGTTGC
TACCTTTACTCTGGCGGTCAATCGGAATTTCAAGGGAGCCAACGGCGAGCGAGAGGCAGACTTTATCAACTGTATGATGT
GGCGCAAGCAGGCGGAGCTATTCGCAGAATGGTGCAAGAAGGGTAATCTGGTCGGTGTGACGGGTCGCATCCAGACAAGG
AACTACGAGAATCAGGAGGGGCGCAGGGTCTATCTGACTGAGGTGGTCGCAGATGGTTTTGAGCGACTTGAAAAGCGTGA
TGATACTGCTAACCGTTCGAATATTGAGGAACAAATGCCAGGATACGCCCTTGAGGAAGATGATTTTCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

65.179

85.496

0.557
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.486

81.679

0.527
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.306

74.809

0.489
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.212

100

0.466
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.697

100

0.45
  ssbB/cilA Streptococcus mitis NCTC 12261

44.697

100

0.45
  ssbB/cilA Streptococcus pneumoniae Rx1

43.939

100

0.443
  ssbB/cilA Streptococcus pneumoniae D39

43.939

100

0.443
  ssbB/cilA Streptococcus pneumoniae R6

43.939

100

0.443
  ssbB/cilA Streptococcus mitis SK321

43.939

100

0.443
  ssbA Streptococcus mutans UA159

41.667

100

0.42
  ssbB Lactococcus lactis subsp. cremoris KW2

44.144

84.733

0.374

Multiple sequence alignment