Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | GUY17_RS19580 | Genome accession | NZ_CP048031 |
| Coordinates | 4564018..4565277 (+) | Length | 419 a.a. |
| NCBI ID | WP_162024081.1 | Uniprot ID | - |
| Organism | Shewanella sp. Arc9-LZ | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4559018..4570277
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GUY17_RS21310 (GUY17_19595) | pilA/pilAI | 4559732..4560166 (+) | 435 | WP_302476619.1 | pilin | Machinery gene |
| GUY17_RS19570 (GUY17_19600) | - | 4560637..4562004 (-) | 1368 | WP_162024079.1 | O-antigen ligase | - |
| GUY17_RS19575 (GUY17_19605) | pilB | 4562202..4563908 (+) | 1707 | WP_162024080.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GUY17_RS19580 (GUY17_19610) | pilC | 4564018..4565277 (+) | 1260 | WP_162024081.1 | type II secretion system F family protein | Machinery gene |
| GUY17_RS19585 (GUY17_19615) | pilD | 4565309..4566235 (+) | 927 | WP_162024082.1 | A24 family peptidase | Machinery gene |
| GUY17_RS19590 (GUY17_19620) | coaE | 4566232..4566861 (+) | 630 | WP_162024083.1 | dephospho-CoA kinase | - |
| GUY17_RS19595 (GUY17_19625) | zapD | 4566854..4567588 (+) | 735 | WP_162024084.1 | cell division protein ZapD | - |
| GUY17_RS19600 (GUY17_19630) | yacG | 4567631..4567843 (+) | 213 | WP_162024085.1 | DNA gyrase inhibitor YacG | - |
| GUY17_RS19605 (GUY17_19635) | mutT | 4567867..4568262 (+) | 396 | WP_162024086.1 | 8-oxo-dGTP diphosphatase MutT | - |
Sequence
Protein
Download Length: 419 a.a. Molecular weight: 46113.30 Da Isoelectric Point: 10.2414
>NTDB_id=419633 GUY17_RS19580 WP_162024081.1 4564018..4565277(+) (pilC) [Shewanella sp. Arc9-LZ]
MATATKRKTKPKKTTKHQPKVFTYQWKGVNRDGQRTSGELKGSTIAEIRSVLKAQGVTPKGVRKKSAPLWKSEKKITAMD
IAMMTRQIATMLSAGVPLVTTIELLGRGHEKAKMRELLGTILSDVQSGIPLSDALRPHRRYFDDLYVDLVAAGEHSGSLD
AVFDRVATYREKAEQLKSKIKKAMFYPAAVVVVAFAVTALLLLFVVPQFEDIFKGFGAELPAFTQMIINLSRWLQSSWYY
FAIAIIAGIWLFKRTHRNSQAFRDRVDVAVLKIPAIGDILHKASMARFARTLATTFAAGVPLIDGLESAAGASGNYVYRK
ALLKVRQEVMAGMQMNVAMLTTGLFPDMLIQMVMIGEESGGLDEMLNKVSNIYEMQVDDAVDGLSSLIEPVMMVVIGTVV
GGLIIGMYLPIFEMGNIVG
MATATKRKTKPKKTTKHQPKVFTYQWKGVNRDGQRTSGELKGSTIAEIRSVLKAQGVTPKGVRKKSAPLWKSEKKITAMD
IAMMTRQIATMLSAGVPLVTTIELLGRGHEKAKMRELLGTILSDVQSGIPLSDALRPHRRYFDDLYVDLVAAGEHSGSLD
AVFDRVATYREKAEQLKSKIKKAMFYPAAVVVVAFAVTALLLLFVVPQFEDIFKGFGAELPAFTQMIINLSRWLQSSWYY
FAIAIIAGIWLFKRTHRNSQAFRDRVDVAVLKIPAIGDILHKASMARFARTLATTFAAGVPLIDGLESAAGASGNYVYRK
ALLKVRQEVMAGMQMNVAMLTTGLFPDMLIQMVMIGEESGGLDEMLNKVSNIYEMQVDDAVDGLSSLIEPVMMVVIGTVV
GGLIIGMYLPIFEMGNIVG
Nucleotide
Download Length: 1260 bp
>NTDB_id=419633 GUY17_RS19580 WP_162024081.1 4564018..4565277(+) (pilC) [Shewanella sp. Arc9-LZ]
ATGGCCACAGCAACAAAAAGAAAGACTAAGCCGAAGAAAACCACCAAGCACCAACCTAAGGTTTTTACTTACCAATGGAA
GGGCGTGAATCGTGATGGTCAACGTACTTCAGGCGAACTAAAAGGCTCCACGATTGCTGAAATTCGCAGTGTGTTAAAAG
CACAAGGTGTCACGCCTAAGGGCGTGCGAAAAAAGTCAGCCCCTTTGTGGAAGTCTGAGAAAAAAATCACCGCGATGGAC
ATTGCGATGATGACTCGTCAAATTGCCACAATGTTGTCAGCAGGCGTCCCGCTTGTGACTACTATTGAATTATTGGGTAG
AGGTCATGAAAAGGCAAAAATGCGTGAATTACTGGGCACTATTTTATCCGACGTCCAATCAGGTATTCCGCTTTCAGATG
CATTAAGACCGCACAGACGATATTTTGATGATTTATATGTCGACTTAGTCGCGGCCGGTGAACATTCAGGCTCACTAGAT
GCGGTATTTGATCGCGTAGCAACCTATCGTGAAAAAGCTGAGCAATTAAAATCTAAAATAAAAAAAGCCATGTTTTATCC
TGCTGCAGTGGTCGTAGTTGCTTTTGCCGTAACTGCACTACTACTATTATTTGTAGTGCCTCAGTTTGAAGATATATTTA
AAGGGTTTGGTGCAGAATTACCAGCCTTTACACAAATGATTATAAACTTATCCCGCTGGCTACAGTCCTCATGGTATTAC
TTTGCCATTGCTATCATTGCTGGTATTTGGCTGTTTAAGCGGACACATAGAAATTCGCAAGCATTCCGAGACCGCGTGGA
TGTTGCCGTTCTAAAAATCCCTGCTATTGGCGATATTCTTCACAAAGCTTCAATGGCTCGCTTTGCGCGTACTTTAGCAA
CAACATTCGCAGCAGGTGTGCCATTAATCGACGGTTTAGAGTCTGCTGCTGGGGCATCAGGTAATTATGTATACCGTAAA
GCATTACTAAAAGTTCGCCAGGAAGTGATGGCAGGCATGCAAATGAATGTCGCTATGCTCACAACAGGCTTGTTTCCAGA
CATGTTAATTCAAATGGTAATGATTGGTGAAGAATCTGGCGGCTTAGATGAAATGCTTAATAAAGTATCAAACATTTATG
AAATGCAGGTTGATGACGCTGTCGATGGTCTATCGAGCCTAATTGAACCCGTTATGATGGTAGTAATTGGTACTGTTGTT
GGCGGTTTAATTATCGGCATGTATTTACCTATTTTCGAAATGGGTAATATTGTCGGTTAA
ATGGCCACAGCAACAAAAAGAAAGACTAAGCCGAAGAAAACCACCAAGCACCAACCTAAGGTTTTTACTTACCAATGGAA
GGGCGTGAATCGTGATGGTCAACGTACTTCAGGCGAACTAAAAGGCTCCACGATTGCTGAAATTCGCAGTGTGTTAAAAG
CACAAGGTGTCACGCCTAAGGGCGTGCGAAAAAAGTCAGCCCCTTTGTGGAAGTCTGAGAAAAAAATCACCGCGATGGAC
ATTGCGATGATGACTCGTCAAATTGCCACAATGTTGTCAGCAGGCGTCCCGCTTGTGACTACTATTGAATTATTGGGTAG
AGGTCATGAAAAGGCAAAAATGCGTGAATTACTGGGCACTATTTTATCCGACGTCCAATCAGGTATTCCGCTTTCAGATG
CATTAAGACCGCACAGACGATATTTTGATGATTTATATGTCGACTTAGTCGCGGCCGGTGAACATTCAGGCTCACTAGAT
GCGGTATTTGATCGCGTAGCAACCTATCGTGAAAAAGCTGAGCAATTAAAATCTAAAATAAAAAAAGCCATGTTTTATCC
TGCTGCAGTGGTCGTAGTTGCTTTTGCCGTAACTGCACTACTACTATTATTTGTAGTGCCTCAGTTTGAAGATATATTTA
AAGGGTTTGGTGCAGAATTACCAGCCTTTACACAAATGATTATAAACTTATCCCGCTGGCTACAGTCCTCATGGTATTAC
TTTGCCATTGCTATCATTGCTGGTATTTGGCTGTTTAAGCGGACACATAGAAATTCGCAAGCATTCCGAGACCGCGTGGA
TGTTGCCGTTCTAAAAATCCCTGCTATTGGCGATATTCTTCACAAAGCTTCAATGGCTCGCTTTGCGCGTACTTTAGCAA
CAACATTCGCAGCAGGTGTGCCATTAATCGACGGTTTAGAGTCTGCTGCTGGGGCATCAGGTAATTATGTATACCGTAAA
GCATTACTAAAAGTTCGCCAGGAAGTGATGGCAGGCATGCAAATGAATGTCGCTATGCTCACAACAGGCTTGTTTCCAGA
CATGTTAATTCAAATGGTAATGATTGGTGAAGAATCTGGCGGCTTAGATGAAATGCTTAATAAAGTATCAAACATTTATG
AAATGCAGGTTGATGACGCTGTCGATGGTCTATCGAGCCTAATTGAACCCGTTATGATGGTAGTAATTGGTACTGTTGTT
GGCGGTTTAATTATCGGCATGTATTTACCTATTTTCGAAATGGGTAATATTGTCGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
53.924 |
94.272 |
0.508 |
| pilC | Acinetobacter baylyi ADP1 |
50 |
97.375 |
0.487 |
| pilC | Acinetobacter baumannii D1279779 |
50.503 |
94.988 |
0.48 |
| pilC | Legionella pneumophila strain ERS1305867 |
48.02 |
96.42 |
0.463 |
| pilC | Vibrio cholerae strain A1552 |
47.99 |
94.988 |
0.456 |
| pilC | Vibrio campbellii strain DS40M4 |
45.025 |
95.943 |
0.432 |
| pilG | Neisseria meningitidis 44/76-A |
40.547 |
95.943 |
0.389 |
| pilG | Neisseria gonorrhoeae MS11 |
40.547 |
95.943 |
0.389 |