Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GSS20_RS12495 | Genome accession | NZ_CP047995 |
| Coordinates | 2701553..2701990 (+) | Length | 145 a.a. |
| NCBI ID | WP_021453050.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain 20150710009 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2696553..2706990
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GSS20_RS12480 (GSS20_13120) | pdhR | 2698586..2699353 (-) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| GSS20_RS12485 (GSS20_13125) | ampD | 2699759..2700310 (-) | 552 | WP_005484832.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| GSS20_RS12490 (GSS20_13130) | nadC | 2700403..2701290 (+) | 888 | WP_015297249.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GSS20_RS12495 (GSS20_13135) | pilA | 2701553..2701990 (+) | 438 | WP_021453050.1 | pilin | Machinery gene |
| GSS20_RS12500 (GSS20_13140) | pilB | 2702002..2703687 (+) | 1686 | WP_031845921.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GSS20_RS12505 (GSS20_13145) | pilC | 2703712..2704935 (+) | 1224 | WP_005462561.1 | type II secretion system F family protein | Machinery gene |
| GSS20_RS12510 (GSS20_13150) | pilD | 2705000..2705869 (+) | 870 | WP_025524821.1 | prepilin peptidase | Machinery gene |
| GSS20_RS12515 (GSS20_13155) | coaE | 2705870..2706484 (+) | 615 | WP_005480887.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 145 a.a. Molecular weight: 14854.00 Da Isoelectric Point: 9.7639
>NTDB_id=419138 GSS20_RS12495 WP_021453050.1 2701553..2701990(+) (pilA) [Vibrio parahaemolyticus strain 20150710009]
MKQSKQKKQQGFTLIELMIVVAVIGVLAAIAVPQYQKYVAKSEAASALASITGHRINVETYVVENGSFPTTAQLPVPTSP
LGVVSYTASASGAGASSGAIKFTFNSTGVSPDVISKDVTLGRDGTGQWSCTSGITATGVKPKACS
MKQSKQKKQQGFTLIELMIVVAVIGVLAAIAVPQYQKYVAKSEAASALASITGHRINVETYVVENGSFPTTAQLPVPTSP
LGVVSYTASASGAGASSGAIKFTFNSTGVSPDVISKDVTLGRDGTGQWSCTSGITATGVKPKACS
Nucleotide
Download Length: 438 bp
>NTDB_id=419138 GSS20_RS12495 WP_021453050.1 2701553..2701990(+) (pilA) [Vibrio parahaemolyticus strain 20150710009]
ATGAAACAGAGTAAACAGAAAAAACAGCAAGGTTTTACCTTGATTGAACTGATGATTGTGGTAGCGGTAATTGGTGTTTT
AGCTGCAATTGCAGTTCCACAATACCAAAAATATGTAGCTAAAAGTGAGGCAGCGTCTGCACTAGCCTCCATCACTGGGC
ATAGAATAAATGTTGAGACTTATGTTGTTGAAAATGGCTCATTTCCAACAACGGCCCAGCTGCCAGTTCCGACTTCTCCA
CTTGGTGTAGTTAGCTATACAGCTTCAGCTTCAGGAGCAGGTGCATCGTCAGGTGCAATAAAATTCACATTTAATAGCAC
AGGTGTAAGTCCAGACGTTATAAGTAAGGACGTGACTCTAGGGCGTGATGGAACAGGTCAATGGAGCTGTACCTCTGGTA
TTACTGCTACAGGTGTAAAACCTAAAGCATGCTCTTAA
ATGAAACAGAGTAAACAGAAAAAACAGCAAGGTTTTACCTTGATTGAACTGATGATTGTGGTAGCGGTAATTGGTGTTTT
AGCTGCAATTGCAGTTCCACAATACCAAAAATATGTAGCTAAAAGTGAGGCAGCGTCTGCACTAGCCTCCATCACTGGGC
ATAGAATAAATGTTGAGACTTATGTTGTTGAAAATGGCTCATTTCCAACAACGGCCCAGCTGCCAGTTCCGACTTCTCCA
CTTGGTGTAGTTAGCTATACAGCTTCAGCTTCAGGAGCAGGTGCATCGTCAGGTGCAATAAAATTCACATTTAATAGCAC
AGGTGTAAGTCCAGACGTTATAAGTAAGGACGTGACTCTAGGGCGTGATGGAACAGGTCAATGGAGCTGTACCTCTGGTA
TTACTGCTACAGGTGTAAAACCTAAAGCATGCTCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
46.711 |
100 |
0.49 |
| pilA | Vibrio cholerae strain A1552 |
46.711 |
100 |
0.49 |
| pilA | Vibrio cholerae C6706 |
46.711 |
100 |
0.49 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
42.953 |
100 |
0.441 |
| pilA | Pseudomonas aeruginosa PAK |
41.447 |
100 |
0.434 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
41.781 |
100 |
0.421 |
| pilA | Acinetobacter baumannii strain A118 |
42.336 |
94.483 |
0.4 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
37.671 |
100 |
0.379 |