Detailed information NTG0419141

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GSS20_RS12510
• Genome accession: NZ_CP047995
• Coordinates: 2705000..2705869 (+)
• Length: 289 a.a.
• NCBI ID: WP_025524821.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 20150710009
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2700000..2710869

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GSS20_RS12490 (GSS20_13130)	nadC	2700403..2701290 (+)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-
GSS20_RS12495 (GSS20_13135)	pilA	2701553..2701990 (+)	438	WP_021453050.1	pilin	Machinery gene
GSS20_RS12500 (GSS20_13140)	pilB	2702002..2703687 (+)	1686	WP_031845921.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GSS20_RS12505 (GSS20_13145)	pilC	2703712..2704935 (+)	1224	WP_005462561.1	type II secretion system F family protein	Machinery gene
GSS20_RS12510 (GSS20_13150)	pilD	2705000..2705869 (+)	870	WP_025524821.1	prepilin peptidase	Machinery gene
GSS20_RS12515 (GSS20_13155)	coaE	2705870..2706484 (+)	615	WP_005480887.1	dephospho-CoA kinase	-
GSS20_RS12520 (GSS20_13160)	zapD	2706512..2707252 (+)	741	WP_023624252.1	cell division protein ZapD	-
GSS20_RS12525 (GSS20_13165)	yacG	2707321..2707515 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
GSS20_RS12530 (GSS20_13170)	rplS	2707889..2708242 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
GSS20_RS12535 (GSS20_13175)	trmD	2708284..2709027 (-)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
GSS20_RS12540 (GSS20_13180)	rimM	2709055..2709603 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
GSS20_RS12545 (GSS20_13185)	rpsP	2709632..2709880 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32419.51 Da
• Isoelectric Point: 7.1971

>NTDB_id=419141 GSS20_RS12510 WP_025524821.1 2705000..2705869(+) (pilD) [Vibrio parahaemolyticus strain 20150710009]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWISLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=419141 GSS20_RS12510 WP_025524821.1 2705000..2705869(+) (pilD) [Vibrio parahaemolyticus strain 20150710009]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTGAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTAGTCCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGATAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.927	100	0.889
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	52.239	92.734	0.484
pilD	Acinetobacter nosocomialis M2	51.866	92.734	0.481
pilD	Neisseria gonorrhoeae MS11	47.464	95.502	0.453