Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GSS20_RS12505 Genome accession   NZ_CP047995
Coordinates   2703712..2704935 (+) Length   407 a.a.
NCBI ID   WP_005462561.1    Uniprot ID   A0A9P2QS90
Organism   Vibrio parahaemolyticus strain 20150710009     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2698712..2709935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSS20_RS12485 (GSS20_13125) ampD 2699759..2700310 (-) 552 WP_005484832.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  GSS20_RS12490 (GSS20_13130) nadC 2700403..2701290 (+) 888 WP_015297249.1 carboxylating nicotinate-nucleotide diphosphorylase -
  GSS20_RS12495 (GSS20_13135) pilA 2701553..2701990 (+) 438 WP_021453050.1 pilin Machinery gene
  GSS20_RS12500 (GSS20_13140) pilB 2702002..2703687 (+) 1686 WP_031845921.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GSS20_RS12505 (GSS20_13145) pilC 2703712..2704935 (+) 1224 WP_005462561.1 type II secretion system F family protein Machinery gene
  GSS20_RS12510 (GSS20_13150) pilD 2705000..2705869 (+) 870 WP_025524821.1 prepilin peptidase Machinery gene
  GSS20_RS12515 (GSS20_13155) coaE 2705870..2706484 (+) 615 WP_005480887.1 dephospho-CoA kinase -
  GSS20_RS12520 (GSS20_13160) zapD 2706512..2707252 (+) 741 WP_023624252.1 cell division protein ZapD -
  GSS20_RS12525 (GSS20_13165) yacG 2707321..2707515 (+) 195 WP_005462546.1 DNA gyrase inhibitor YacG -
  GSS20_RS12530 (GSS20_13170) rplS 2707889..2708242 (-) 354 WP_005462554.1 50S ribosomal protein L19 -
  GSS20_RS12535 (GSS20_13175) trmD 2708284..2709027 (-) 744 WP_005462562.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  GSS20_RS12540 (GSS20_13180) rimM 2709055..2709603 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  GSS20_RS12545 (GSS20_13185) rpsP 2709632..2709880 (-) 249 WP_005379962.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45234.41 Da        Isoelectric Point: 10.4368

>NTDB_id=419140 GSS20_RS12505 WP_005462561.1 2703712..2704935(+) (pilC) [Vibrio parahaemolyticus strain 20150710009]
MKTTTPQLKNFRWKGVNSSGKKTSGQTLAMSEIEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGKDITVFTRQISTML
VTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAMRTASNHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVILVALGVSFIMLTKVIPEFEKMFVGFGAELPWFTRQVLDLSAWTQNWSPFIALGSISLFISA
RVLSKRSDSFRLMLNRSVLKFPVLGAVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=419140 GSS20_RS12505 WP_005462561.1 2703712..2704935(+) (pilC) [Vibrio parahaemolyticus strain 20150710009]
ATGAAAACTACGACACCACAATTAAAGAACTTCCGTTGGAAAGGCGTCAACAGCTCAGGGAAAAAGACCTCTGGTCAAAC
TCTGGCAATGAGCGAAATCGAAGTACGAGAGCGCTTAGATGCCCAGCACATCAAAATCAAAAAGCTAAAGAAAAGCAGCA
TCTCTTTTTTGACTAAACTTAGCCATCGCGTAAAAGGAAAAGACATCACGGTTTTCACTCGTCAAATCTCAACGATGCTA
GTAACTGGTGTGCCGCTAGTGCAAGCATTGAAATTGGTCTCTGATAACCACAAAAAAGCGGAAATGAAATCCATTTTGAT
GAGTGTAACTCGGGCTGTTGAAGCGGGTACGCCGATGTCCAAAGCGATGCGTACCGCCAGTAACCATTTTGACCCGCTGT
ATACCGACTTGATTGCGACAGGAGAACAATCGGGCAACTTAGCCGAAGTGTTCGAACGCTTAGCCACCTACAGGGAAAAA
AATGAGCAGCTTAGAGCCAAAGTGATCAAGGCTCTAATATATCCAGCCATGGTTATTCTAGTTGCACTGGGAGTATCGTT
TATCATGCTAACCAAGGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGCTTTGGTGCTGAATTGCCATGGTTTACAAGGC
AAGTCTTAGATCTTTCCGCTTGGACACAAAACTGGAGCCCATTTATCGCACTTGGTTCCATCAGTTTATTTATCTCCGCG
AGAGTACTCTCTAAGCGTTCAGATTCTTTTCGTTTAATGCTCAACCGATCTGTACTTAAGTTTCCAGTCCTTGGGGCGGT
TTTATCGAAAGCCGCTATCGCAAAATTTAGTCGAACACTCGCTACGAGCTTTACGGCGGGCATTCCGATTCTAACCAGTT
TAAAAACCACCTCGAAAACGTCCGGAAATATGCATTATCAATTGGCTATCGAAGAGGTTTATCGAGATACCGCAGCAGGA
ATGCCGATGTATGTTGCAATGCGCAATTGCAACGTGTTTCCTGAGTTGGTGCTGCAAATGGTTATGATCGGCGAAGAATC
CGGCCGACTTGACGATATGCTCAATAAAGTCGCCACAATTTACGAGTTTGAAGTGGACAACACCGTCGATAACCTCAGTA
AAATCTTAGAACCATTAATTATCGTTTTTTTAGGTATCGTTGTCGGTGGCTTGGTCACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

86.241

100

0.862
  pilC Vibrio cholerae strain A1552

74.321

99.509

0.74
  pilC Acinetobacter baylyi ADP1

42.75

98.28

0.42
  pilC Acinetobacter baumannii D1279779

41.439

99.017

0.41
  pilG Neisseria gonorrhoeae MS11

40.494

99.509

0.403
  pilG Neisseria meningitidis 44/76-A

40.247

99.509

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398
  pilC Legionella pneumophila strain ERS1305867

39.803

100

0.398

Multiple sequence alignment