Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GV831_RS12035 Genome accession   NZ_CP047891
Coordinates   2390799..2391224 (+) Length   141 a.a.
NCBI ID   WP_014570750.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain WHH2311     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2378153..2398998 2390799..2391224 within 0


Gene organization within MGE regions


Location: 2378153..2398998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GV831_RS11910 (GV831_11860) - 2378153..2378527 (+) 375 WP_014570768.1 nuclear transport factor 2 family protein -
  GV831_RS11915 (GV831_11865) - 2378540..2379061 (+) 522 WP_003131472.1 NUDIX hydrolase -
  GV831_RS11920 (GV831_11870) - 2379027..2379491 (+) 465 WP_003131474.1 VOC family protein -
  GV831_RS11925 (GV831_11875) fmt 2379488..2380447 (+) 960 WP_003131475.1 methionyl-tRNA formyltransferase -
  GV831_RS11930 (GV831_11880) - 2380622..2380864 (+) 243 WP_003131476.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  GV831_RS11935 (GV831_11885) amaP 2380921..2381451 (+) 531 WP_021216469.1 alkaline shock response membrane anchor protein AmaP -
  GV831_RS11940 (GV831_11890) - 2381462..2381650 (+) 189 WP_012898445.1 DUF2273 domain-containing protein -
  GV831_RS11945 (GV831_11895) - 2381671..2382177 (+) 507 WP_003131479.1 Asp23/Gls24 family envelope stress response protein -
  GV831_RS11950 (GV831_11900) - 2382477..2383658 (-) 1182 WP_058207138.1 site-specific integrase -
  GV831_RS11955 (GV831_11905) - 2383725..2384060 (-) 336 WP_014570766.1 hypothetical protein -
  GV831_RS11960 (GV831_11910) - 2384074..2384508 (-) 435 WP_014570765.1 zinc peptidase -
  GV831_RS11965 (GV831_11915) - 2384514..2385077 (-) 564 WP_014570764.1 helix-turn-helix transcriptional regulator -
  GV831_RS11970 (GV831_11920) - 2385352..2385552 (+) 201 WP_014570763.1 putative transcriptional regulator -
  GV831_RS11975 (GV831_11925) - 2385684..2386226 (-) 543 WP_014570762.1 hypothetical protein -
  GV831_RS11980 (GV831_11930) - 2386381..2386590 (+) 210 WP_014570761.1 hypothetical protein -
  GV831_RS11985 (GV831_11935) - 2386580..2386837 (-) 258 WP_014570760.1 hypothetical protein -
  GV831_RS11990 (GV831_11940) - 2386943..2387182 (+) 240 WP_014570759.1 helix-turn-helix transcriptional regulator -
  GV831_RS11995 (GV831_11945) - 2387195..2387962 (+) 768 WP_014570758.1 phage repressor protein/antirepressor Ant -
  GV831_RS12000 (GV831_11950) - 2387975..2388244 (+) 270 WP_014570757.1 hypothetical protein -
  GV831_RS12005 (GV831_11955) - 2388339..2388533 (+) 195 WP_014570756.1 hypothetical protein -
  GV831_RS12010 (GV831_11960) - 2388563..2388841 (-) 279 WP_014570755.1 DUF3892 domain-containing protein -
  GV831_RS12015 (GV831_11965) - 2388992..2389192 (+) 201 WP_014570754.1 helix-turn-helix transcriptional regulator -
  GV831_RS12020 (GV831_11970) - 2389194..2389421 (+) 228 WP_014570753.1 hypothetical protein -
  GV831_RS12025 (GV831_11975) - 2389521..2390039 (+) 519 WP_014570752.1 host-nuclease inhibitor Gam family protein -
  GV831_RS12030 (GV831_11980) - 2390048..2390806 (+) 759 WP_014570751.1 Rad52/Rad22 family DNA repair protein -
  GV831_RS12035 (GV831_11985) ssb 2390799..2391224 (+) 426 WP_014570750.1 single-stranded DNA-binding protein Machinery gene
  GV831_RS12040 (GV831_11990) - 2391349..2392155 (+) 807 WP_014570749.1 phage replisome organizer N-terminal domain-containing protein -
  GV831_RS12045 (GV831_11995) - 2392165..2393082 (+) 918 WP_014570748.1 ATP-binding protein -
  GV831_RS12050 (GV831_12000) - 2393063..2393227 (+) 165 WP_014570747.1 hypothetical protein -
  GV831_RS12055 (GV831_12005) - 2393217..2393606 (+) 390 WP_014570746.1 RusA family crossover junction endodeoxyribonuclease -
  GV831_RS12060 (GV831_12010) - 2393609..2393803 (+) 195 WP_014570745.1 hypothetical protein -
  GV831_RS12065 (GV831_12015) - 2393796..2394035 (+) 240 WP_014570744.1 DUF1031 family protein -
  GV831_RS12070 (GV831_12020) - 2394544..2394744 (+) 201 WP_014570743.1 DUF1125 domain-containing protein -
  GV831_RS12075 (GV831_12025) - 2394741..2394920 (+) 180 WP_043991166.1 hypothetical protein -
  GV831_RS12080 (GV831_12030) - 2394913..2395587 (+) 675 WP_014570539.1 DUF1642 domain-containing protein -
  GV831_RS12085 (GV831_12035) - 2395584..2396003 (+) 420 WP_003129863.1 dUTP diphosphatase -
  GV831_RS12090 (GV831_12040) - 2396007..2396279 (+) 273 WP_014570742.1 hypothetical protein -
  GV831_RS12095 (GV831_12045) - 2396306..2396986 (+) 681 WP_014570741.1 hypothetical protein -
  GV831_RS12100 (GV831_12050) - 2397064..2397207 (+) 144 WP_010905362.1 hypothetical protein -
  GV831_RS12105 (GV831_12055) - 2397258..2397380 (+) 123 WP_260313839.1 DUF1660 family phage protein -
  GV831_RS12110 - 2397381..2397503 (+) 123 WP_014570740.1 hypothetical protein -
  GV831_RS12115 (GV831_12060) - 2397503..2397706 (+) 204 WP_014570739.1 hypothetical protein -
  GV831_RS12120 (GV831_12065) - 2397714..2397899 (+) 186 WP_014570738.1 hypothetical protein -
  GV831_RS12125 (GV831_12070) - 2397896..2398051 (+) 156 WP_043991164.1 hypothetical protein -
  GV831_RS12130 (GV831_12075) - 2398576..2398998 (+) 423 WP_010905372.1 RinA family protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15742.47 Da        Isoelectric Point: 5.1972

>NTDB_id=418367 GV831_RS12035 WP_014570750.1 2390799..2391224(+) (ssb) [Lactococcus lactis subsp. lactis strain WHH2311]
MINNVTLVGRITKEPELRYTPQNKAVASFTLAVNRQFKNANGEREADFINCVIWGKSAENLANWTHKGQLIGVIGNIQTR
NYENQQGQRVYITEVVASNFQVLEKSNQANGERVGNPASKPQNNDSFGSDPMEISDDDLPF

Nucleotide


Download         Length: 426 bp        

>NTDB_id=418367 GV831_RS12035 WP_014570750.1 2390799..2391224(+) (ssb) [Lactococcus lactis subsp. lactis strain WHH2311]
ATGATTAACAATGTCACTCTAGTAGGAAGAATCACTAAAGAACCTGAACTTAGATATACACCACAAAATAAAGCAGTTGC
TTCATTTACTCTTGCAGTTAATCGTCAATTTAAAAATGCTAATGGAGAAAGAGAAGCTGACTTCATCAATTGTGTTATCT
GGGGTAAATCAGCCGAAAACTTAGCCAATTGGACTCATAAAGGTCAATTAATTGGAGTTATTGGGAATATCCAAACTCGG
AACTATGAGAACCAACAAGGGCAACGTGTTTATATTACGGAGGTTGTCGCAAGTAATTTCCAAGTACTAGAAAAAAGTAA
TCAAGCAAATGGTGAACGAGTTGGTAATCCAGCTTCAAAACCACAAAATAATGATTCTTTTGGAAGTGATCCAATGGAAA
TTTCAGATGATGACCTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

54.118

100

0.652
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.744

100

0.631
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.262

100

0.433
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.262

100

0.433
  ssbB/cilA Streptococcus mitis NCTC 12261

43.262

100

0.433
  ssbB/cilA Streptococcus pneumoniae Rx1

42.553

100

0.426
  ssbB/cilA Streptococcus pneumoniae D39

42.553

100

0.426
  ssbB/cilA Streptococcus pneumoniae R6

42.553

100

0.426
  ssbB/cilA Streptococcus mitis SK321

42.553

100

0.426
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.692

73.759

0.426
  ssbA Streptococcus mutans UA159

39.716

100

0.397
  ssbB Lactococcus lactis subsp. cremoris KW2

50.485

73.05

0.369

Multiple sequence alignment