Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   HMPREF0833_RS08390 Genome accession   NC_015678
Coordinates   1797416..1797811 (+) Length   131 a.a.
NCBI ID   WP_003019117.1    Uniprot ID   I2NCK2
Organism   Streptococcus parasanguinis ATCC 15912     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1792416..1802811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF0833_RS08365 (HMPREF0833_11669) - 1793135..1794619 (-) 1485 WP_003019066.1 DUF1846 domain-containing protein -
  HMPREF0833_RS08370 (HMPREF0833_11670) pepA 1794864..1795928 (-) 1065 WP_013904497.1 glutamyl aminopeptidase -
  HMPREF0833_RS08375 (HMPREF0833_11671) - 1796071..1796361 (+) 291 WP_013904498.1 DUF4651 domain-containing protein -
  HMPREF0833_RS08380 (HMPREF0833_11672) - 1796358..1796675 (+) 318 WP_013904499.1 thioredoxin family protein -
  HMPREF0833_RS08385 (HMPREF0833_11673) ytpR 1796685..1797311 (+) 627 WP_013904500.1 YtpR family tRNA-binding protein -
  HMPREF0833_RS08390 (HMPREF0833_11674) ssbB/cilA 1797416..1797811 (+) 396 WP_003019117.1 single-stranded DNA-binding protein Machinery gene
  HMPREF0833_RS08395 (HMPREF0833_11675) - 1797997..1798980 (+) 984 WP_013904502.1 substrate-binding domain-containing protein -
  HMPREF0833_RS08400 (HMPREF0833_11676) - 1798980..1800296 (+) 1317 WP_013904503.1 sensor histidine kinase -
  HMPREF0833_RS08405 (HMPREF0833_11677) - 1800302..1800985 (+) 684 WP_037585171.1 response regulator transcription factor -
  HMPREF0833_RS08410 (HMPREF0833_11678) - 1800982..1802280 (+) 1299 WP_013904504.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14757.77 Da        Isoelectric Point: 5.9275

>NTDB_id=41405 HMPREF0833_RS08390 WP_003019117.1 1797416..1797811(+) (ssbB/cilA) [Streptococcus parasanguinis ATCC 15912]
MYNKVILIGRLVAAPELHKTSTDKSVARVTVAVNRRYKDQNGDRETDFVNVVVWGKLAETMASYASKGSLISLDGEIRTR
RYEKNGVMQYVTEVLCQSFQLLESRAQRAMRENGGTGDLADIILEEEDLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=41405 HMPREF0833_RS08390 WP_003019117.1 1797416..1797811(+) (ssbB/cilA) [Streptococcus parasanguinis ATCC 15912]
ATGTATAATAAAGTTATTTTAATCGGTCGCCTAGTAGCGGCTCCAGAATTGCATAAAACCAGCACAGACAAATCCGTTGC
CCGAGTGACCGTTGCGGTCAATCGTCGCTACAAGGACCAAAATGGAGATCGAGAGACGGATTTTGTTAATGTGGTTGTCT
GGGGGAAATTGGCTGAAACCATGGCTAGTTATGCCAGTAAAGGAAGCTTGATCTCTTTGGATGGAGAGATTCGGACACGC
CGCTACGAGAAAAATGGGGTCATGCAGTATGTGACAGAGGTCCTCTGCCAAAGTTTTCAGTTGCTAGAGAGCCGCGCTCA
GCGAGCGATGCGTGAAAATGGTGGAACGGGAGATTTGGCCGATATTATCTTAGAAGAGGAAGATCTTCCTTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2NCK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae Rx1

77.099

100

0.771
  ssbB/cilA Streptococcus pneumoniae D39

77.099

100

0.771
  ssbB/cilA Streptococcus pneumoniae R6

77.099

100

0.771
  ssbB/cilA Streptococcus mitis NCTC 12261

77.099

100

0.771
  ssbB/cilA Streptococcus mitis SK321

77.099

100

0.771
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.718
  ssbB Lactococcus lactis subsp. cremoris KW2

58.407

86.26

0.504
  ssb Latilactobacillus sakei subsp. sakei 23K

45.69

88.55

0.405
  ssbB Bacillus subtilis subsp. subtilis str. 168

45.37

82.443

0.374
  ssbA Bacillus subtilis subsp. subtilis str. 168

46.226

80.916

0.374

Multiple sequence alignment