Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GSN03_RS10640 Genome accession   NZ_CP047366
Coordinates   2073033..2073371 (+) Length   112 a.a.
NCBI ID   WP_212090594.1    Uniprot ID   -
Organism   Bacillus nitratireducens strain BM02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2068033..2078371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSN03_RS10615 (GSN03_10520) - 2068195..2069067 (-) 873 WP_212090585.1 hypothetical protein -
  GSN03_RS10620 (GSN03_10525) - 2069177..2069824 (+) 648 WP_212090587.1 HD domain-containing protein -
  GSN03_RS10625 (GSN03_10530) - 2069821..2071716 (+) 1896 WP_000783175.1 ABC-F family ATP-binding cassette domain-containing protein -
  GSN03_RS10630 (GSN03_10535) - 2071792..2072523 (+) 732 WP_212090589.1 Bax inhibitor-1/YccA family protein -
  GSN03_RS10635 (GSN03_10540) - 2072620..2072871 (+) 252 WP_212090592.1 DUF4318 domain-containing protein -
  GSN03_RS10640 (GSN03_10545) ssbA 2073033..2073371 (+) 339 WP_212090594.1 single-stranded DNA-binding protein Machinery gene
  GSN03_RS10645 (GSN03_10550) - 2073537..2074664 (+) 1128 WP_000692559.1 conserved virulence factor C family protein -
  GSN03_RS10650 (GSN03_10555) - 2074668..2075051 (+) 384 WP_098634941.1 thiol-disulfide oxidoreductase DCC family protein -
  GSN03_RS10655 (GSN03_10560) - 2075134..2075568 (+) 435 WP_000063704.1 BrxA/BrxB family bacilliredoxin -
  GSN03_RS10660 (GSN03_10565) - 2075618..2076394 (+) 777 WP_212090596.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12865.69 Da        Isoelectric Point: 9.4477

>NTDB_id=413035 GSN03_RS10640 WP_212090594.1 2073033..2073371(+) (ssbA) [Bacillus nitratireducens strain BM02]
MMNRVVLIGRLTKEPKLYYTKQGVAYARICVAVNRGFRNSLGEQQADFINCVIWRRSAENVTEYCTKGSLVGITGRIHTS
NYDDEQGKRIYRTEVVIESITFLERRPESASQ

Nucleotide


Download         Length: 339 bp        

>NTDB_id=413035 GSN03_RS10640 WP_212090594.1 2073033..2073371(+) (ssbA) [Bacillus nitratireducens strain BM02]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAAAATTATACTACACAAAACAAGGTGTCGCTTATGC
ACGGATATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAGCAAGCAGATTTTATTAATTGTGTCATAT
GGAGAAGGTCGGCTGAAAATGTAACAGAATATTGTACGAAGGGCTCACTTGTTGGGATTACAGGGCGTATTCATACGAGT
AATTACGATGATGAACAAGGAAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGCATTACATTTTTAGAGAGAAGGCC
GGAGAGTGCATCGCAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

94.643

0.545
  ssb Latilactobacillus sakei subsp. sakei 23K

54.717

94.643

0.518
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.467

95.536

0.482
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.727

98.214

0.42
  ssbB Lactococcus lactis subsp. cremoris KW2

43.81

93.75

0.411
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.818

98.214

0.411
  ssbA Streptococcus mutans UA159

40.909

98.214

0.402
  ssbB/cilA Streptococcus pneumoniae Rx1

40.909

98.214

0.402
  ssbB/cilA Streptococcus pneumoniae D39

40.909

98.214

0.402
  ssbB/cilA Streptococcus pneumoniae R6

40.909

98.214

0.402
  ssbB/cilA Streptococcus mitis SK321

40.909

98.214

0.402
  ssbB/cilA Streptococcus mitis NCTC 12261

40

98.214

0.393

Multiple sequence alignment