Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | GKS41_RS00090 | Genome accession | NZ_CP047268 |
| Coordinates | 16791..17132 (-) | Length | 113 a.a. |
| NCBI ID | WP_045926379.1 | Uniprot ID | A0AAE2NWI9 |
| Organism | Bacillus velezensis strain DH8043 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 11791..22132
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GKS41_RS00075 | - | 12058..14832 (+) | 2775 | WP_159353526.1 | DEAD/DEAH box helicase | - |
| GKS41_RS00080 | - | 14945..15802 (-) | 858 | WP_159353527.1 | Cof-type HAD-IIB family hydrolase | - |
| GKS41_RS00085 | - | 15799..16581 (-) | 783 | WP_016937688.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| GKS41_RS00090 | ssbB | 16791..17132 (-) | 342 | WP_045926379.1 | single-stranded DNA-binding protein | Machinery gene |
| GKS41_RS00095 | - | 17230..17583 (-) | 354 | WP_060964082.1 | hypothetical protein | - |
| GKS41_RS00100 | - | 17756..18166 (+) | 411 | WP_016937685.1 | YwpF-like family protein | - |
| GKS41_RS00105 | mscL | 18212..18607 (-) | 396 | WP_049627557.1 | large conductance mechanosensitive channel protein MscL | - |
| GKS41_RS00110 | fabZ | 18664..19089 (-) | 426 | WP_014419074.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| GKS41_RS00115 | - | 19285..20349 (+) | 1065 | WP_159353528.1 | tetratricopeptide repeat protein | - |
| GKS41_RS00120 | - | 20367..21188 (-) | 822 | WP_014419076.1 | flagellar hook-basal body protein | - |
| GKS41_RS00125 | - | 21213..22010 (-) | 798 | WP_007614310.1 | flagellar hook-basal body protein | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 12563.41 Da Isoelectric Point: 9.5812
>NTDB_id=411970 GKS41_RS00090 WP_045926379.1 16791..17132(-) (ssbB) [Bacillus velezensis strain DH8043]
MFNHVMLVGRLTKDPELRFTSAGIAVAHITLAVSRNFKSASGETGTDFVNCTIWRKSAENTALYCQKGSLVGVSGRIQTR
SYEKTDGVKVYVTEVMADTVRFMDQKRKEPLAE
MFNHVMLVGRLTKDPELRFTSAGIAVAHITLAVSRNFKSASGETGTDFVNCTIWRKSAENTALYCQKGSLVGVSGRIQTR
SYEKTDGVKVYVTEVMADTVRFMDQKRKEPLAE
Nucleotide
Download Length: 342 bp
>NTDB_id=411970 GKS41_RS00090 WP_045926379.1 16791..17132(-) (ssbB) [Bacillus velezensis strain DH8043]
TTGTTTAACCACGTGATGCTTGTCGGCCGGCTGACGAAAGACCCGGAGCTCCGTTTTACATCAGCGGGCATTGCCGTGGC
TCATATTACCTTGGCTGTCAGCCGCAATTTTAAAAGCGCGTCAGGTGAAACCGGGACTGACTTTGTCAACTGCACCATTT
GGAGAAAAAGCGCTGAAAACACAGCATTGTACTGCCAAAAAGGGTCATTGGTCGGTGTGAGCGGCAGAATCCAGACGAGA
AGCTATGAAAAGACAGACGGCGTAAAAGTTTATGTGACTGAGGTCATGGCTGATACCGTTCGGTTTATGGATCAAAAACG
GAAAGAGCCGCTGGCTGAATAA
TTGTTTAACCACGTGATGCTTGTCGGCCGGCTGACGAAAGACCCGGAGCTCCGTTTTACATCAGCGGGCATTGCCGTGGC
TCATATTACCTTGGCTGTCAGCCGCAATTTTAAAAGCGCGTCAGGTGAAACCGGGACTGACTTTGTCAACTGCACCATTT
GGAGAAAAAGCGCTGAAAACACAGCATTGTACTGCCAAAAAGGGTCATTGGTCGGTGTGAGCGGCAGAATCCAGACGAGA
AGCTATGAAAAGACAGACGGCGTAAAAGTTTATGTGACTGAGGTCATGGCTGATACCGTTCGGTTTATGGATCAAAAACG
GAAAGAGCCGCTGGCTGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
77.876 |
100 |
0.779 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
93.805 |
0.549 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.717 |
93.805 |
0.513 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
46.903 |
100 |
0.469 |
| ssbA | Streptococcus mutans UA159 |
42.478 |
100 |
0.425 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
41.593 |
100 |
0.416 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
41.593 |
100 |
0.416 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
40.708 |
100 |
0.407 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
40.708 |
100 |
0.407 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
40.708 |
100 |
0.407 |
| ssbB/cilA | Streptococcus mitis SK321 |
40.708 |
100 |
0.407 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
39.048 |
92.92 |
0.363 |