Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   N026_RS03755 Genome accession   NZ_CP047267
Coordinates   827858..829075 (-) Length   405 a.a.
NCBI ID   WP_024643091.1    Uniprot ID   A0AAJ4E2N2
Organism   Pseudomonas syringae UB303     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 822858..834075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N026_RS03735 (N026_03735) - 825570..826031 (+) 462 WP_024661081.1 hypothetical protein -
  N026_RS03740 (N026_03740) yacG 826158..826367 (-) 210 WP_002552020.1 DNA gyrase inhibitor YacG -
  N026_RS03745 (N026_03745) coaE 826364..826987 (-) 624 WP_024661082.1 dephospho-CoA kinase -
  N026_RS03750 (N026_03750) pilD 826984..827856 (-) 873 WP_024661083.1 prepilin peptidase Machinery gene
  N026_RS03755 (N026_03755) pilC 827858..829075 (-) 1218 WP_024643091.1 type II secretion system F family protein Machinery gene
  N026_RS03760 (N026_03760) pilB 829078..830772 (-) 1695 WP_024643090.1 type IV-A pilus assembly ATPase PilB Machinery gene
  N026_RS03765 (N026_03765) pilA 830995..831423 (+) 429 WP_024643089.1 pilin Machinery gene
  N026_RS03770 (N026_03770) - 831638..831835 (-) 198 WP_080267182.1 DUF1523 family protein -
  N026_RS03775 (N026_03775) - 832042..832734 (+) 693 WP_032626650.1 DUF433 domain-containing protein -
  N026_RS03780 (N026_03780) - 832782..833327 (-) 546 WP_004415097.1 DUF1523 family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44130.88 Da        Isoelectric Point: 10.0989

>NTDB_id=411949 N026_RS03755 WP_024643091.1 827858..829075(-) (pilC) [Pseudomonas syringae UB303]
MASKAVKVTVYTWEGVDKKGTKTSGELSGHNVALVKAQLRKQGINPIKVRKKSVSIFGKGKKIKPLDIAFFSRQMATMMK
AGVPLLQSFDIISEGAENPNMRALVGSLKQEVSAGNSFATALRQKPEYFDELFCNLVDAGEQAGALESLLDRVASYKEKT
EKLKAKIKKAMTYPTAVLVVAVFVSGILLIKVVPQFQTVFEGFGAELPAFTLMVIGLSEIVQTWWWAIVGLFFGSFFLFR
RAYKKSQSVRDSVDRFLLKIPIIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGATGNVVFRNAVNKVKQDVSTGM
QLNFSMRSTGVFPSLAIQMTAIGEESGALDNMLDKVATYYEDEVDNMVDSLTSLMEPMIMAVLGVIVGGLVIAMYLPIFK
LGNVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=411949 N026_RS03755 WP_024643091.1 827858..829075(-) (pilC) [Pseudomonas syringae UB303]
ATGGCCAGCAAGGCAGTCAAAGTCACCGTCTACACATGGGAAGGTGTTGACAAAAAAGGCACTAAAACCAGTGGTGAACT
CAGTGGACATAACGTCGCGCTCGTAAAAGCCCAACTGCGCAAACAAGGCATCAATCCGATCAAGGTGCGTAAGAAATCCG
TATCGATCTTCGGAAAGGGGAAGAAGATCAAGCCGCTGGACATCGCATTTTTTTCCCGGCAGATGGCGACCATGATGAAA
GCTGGAGTGCCGCTTTTGCAATCGTTCGACATCATCAGCGAAGGCGCGGAAAACCCTAACATGCGTGCGCTCGTAGGCTC
ATTGAAGCAGGAAGTTTCGGCAGGTAATAGCTTCGCGACCGCATTACGGCAAAAACCAGAGTACTTTGATGAGTTATTTT
GTAACCTTGTGGACGCTGGCGAGCAGGCAGGCGCACTTGAAAGCCTGCTTGACAGGGTCGCAAGCTATAAGGAAAAGACG
GAAAAACTCAAAGCCAAGATAAAAAAAGCAATGACCTACCCTACCGCTGTTTTAGTGGTAGCGGTATTCGTATCAGGCAT
TCTTCTCATAAAAGTTGTGCCGCAATTTCAGACAGTATTCGAAGGCTTTGGCGCGGAATTGCCAGCGTTTACGCTGATGG
TAATAGGCTTATCGGAAATTGTTCAGACGTGGTGGTGGGCAATCGTTGGTCTATTTTTTGGATCATTCTTTTTGTTCCGG
CGCGCTTATAAAAAATCTCAGAGCGTTCGCGACAGCGTGGACCGATTCCTGCTGAAAATACCAATAATTGGCCCCCTCAT
TTTTAAATCATCAGTTGCGCGATATGCACGCACGCTTGCAACGACCTTTGCAGCAGGGGTTCCGCTGGTAGAAGCTTTGG
ACTCGGTCGCAGGAGCCACGGGCAATGTGGTTTTCAGGAACGCAGTCAACAAAGTCAAGCAAGATGTATCTACCGGTATG
CAACTGAATTTCTCGATGCGCTCGACCGGCGTCTTCCCGAGCCTGGCGATTCAGATGACCGCTATTGGCGAAGAGTCTGG
CGCACTGGACAATATGCTCGATAAAGTTGCTACTTACTATGAAGATGAGGTCGACAACATGGTCGATAGCCTGACAAGCC
TGATGGAACCCATGATCATGGCTGTGCTGGGTGTCATCGTCGGCGGCCTTGTCATTGCGATGTACCTCCCCATTTTCAAA
CTCGGAAACGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

73.58

100

0.736
  pilC Acinetobacter baylyi ADP1

59.069

100

0.595
  pilC Acinetobacter baumannii D1279779

58.416

99.753

0.583
  pilC Legionella pneumophila strain ERS1305867

52.525

97.778

0.514
  pilC Vibrio campbellii strain DS40M4

41.769

100

0.42
  pilG Neisseria gonorrhoeae MS11

41.542

99.259

0.412
  pilG Neisseria meningitidis 44/76-A

41.542

99.259

0.412
  pilC Vibrio cholerae strain A1552

40.988

100

0.41
  pilC Thermus thermophilus HB27

39.401

99.012

0.39

Multiple sequence alignment