Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   D5E69_RS20685 Genome accession   NZ_CP047095
Coordinates   4026888..4027250 (-) Length   120 a.a.
NCBI ID   WP_048004891.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain 151-25     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4021888..4032250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5E69_RS20670 (D5E69_20680) - 4022083..4023708 (+) 1626 WP_159130201.1 SWIM zinc finger family protein -
  D5E69_RS20675 (D5E69_20685) - 4023701..4026520 (+) 2820 WP_048015281.1 DEAD/DEAH box helicase -
  D5E69_RS20680 (D5E69_20690) - 4026705..4026869 (-) 165 WP_156183348.1 hypothetical protein -
  D5E69_RS20685 (D5E69_20695) ssbB 4026888..4027250 (-) 363 WP_048004891.1 single-stranded DNA-binding protein Machinery gene
  D5E69_RS20690 (D5E69_20700) - 4027511..4027954 (+) 444 WP_048004890.1 YwpF-like family protein -
  D5E69_RS20695 (D5E69_20705) - 4028049..4028369 (+) 321 WP_048004889.1 helix-turn-helix domain-containing protein -
  D5E69_RS20700 (D5E69_20710) - 4028428..4028571 (-) 144 WP_079514301.1 anti-repressor SinI family protein -
  D5E69_RS20705 (D5E69_20715) - 4029039..4029701 (-) 663 WP_159130202.1 LPXTG cell wall anchor domain-containing protein -
  D5E69_RS20710 (D5E69_20720) - 4029947..4030168 (+) 222 WP_159130203.1 hypothetical protein -
  D5E69_RS20715 (D5E69_20725) - 4030165..4030728 (+) 564 WP_159130204.1 class D sortase -
  D5E69_RS20720 (D5E69_20730) fabZ 4030777..4031211 (-) 435 WP_048004885.1 3-hydroxyacyl-ACP dehydratase FabZ -
  D5E69_RS20725 (D5E69_20735) - 4031313..4031570 (-) 258 WP_048004884.1 DNA-directed RNA polymerase subunit beta -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13665.48 Da        Isoelectric Point: 9.0849

>NTDB_id=410294 D5E69_RS20685 WP_048004891.1 4026888..4027250(-) (ssbB) [Rossellomorea marisflavi strain 151-25]
MINQVTLVGRLTKDPESRKTLEGKSVLNVTVAVNRQFKNQQGQIDTDFVLCTLWNRAADNTEKYCRKGSVIGVTGRIQTR
SYENETGKRTYVTEVVAENVRFLDSKPPEETRKEAIEIPF

Nucleotide


Download         Length: 363 bp        

>NTDB_id=410294 D5E69_RS20685 WP_048004891.1 4026888..4027250(-) (ssbB) [Rossellomorea marisflavi strain 151-25]
GTGATCAATCAAGTGACGCTTGTTGGCAGGCTGACCAAGGACCCCGAGTCCAGGAAGACCCTTGAAGGGAAATCGGTCCT
CAATGTGACCGTGGCCGTGAACCGACAATTCAAGAATCAGCAGGGGCAGATCGATACGGATTTTGTCCTCTGCACGCTAT
GGAACCGGGCGGCGGATAATACGGAGAAATACTGCCGGAAGGGGTCGGTTATCGGAGTGACAGGAAGGATCCAGACGAGA
TCCTACGAAAATGAAACGGGAAAGCGCACATATGTAACGGAAGTGGTAGCCGAGAACGTCCGTTTCCTCGACAGCAAGCC
TCCCGAAGAAACAAGGAAGGAAGCGATCGAAATCCCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.162

92.5

0.575
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.717

88.333

0.483
  ssb Latilactobacillus sakei subsp. sakei 23K

48.673

94.167

0.458
  ssbA Streptococcus mutans UA159

43.363

94.167

0.408
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.363

94.167

0.408
  ssbB/cilA Streptococcus pneumoniae R6

42.478

94.167

0.4
  ssbB/cilA Streptococcus pneumoniae Rx1

42.478

94.167

0.4
  ssbB/cilA Streptococcus pneumoniae D39

42.478

94.167

0.4
  ssbB/cilA Streptococcus mitis SK321

42.478

94.167

0.4
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.478

94.167

0.4
  ssbB/cilA Streptococcus mitis NCTC 12261

41.593

94.167

0.392
  ssbB Lactococcus lactis subsp. cremoris KW2

38.793

96.667

0.375

Multiple sequence alignment