Detailed information
Bioinformatically predicted
Overview
| Name | comP | Type | Machinery gene |
| Locus tag | GNX18_RS00655 | Genome accession | NZ_CP046948 |
| Coordinates | 134947..135387 (+) | Length | 146 a.a. |
| NCBI ID | WP_205828022.1 | Uniprot ID | - |
| Organism | Microbulbifer sp. SH-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 129969..145038 | 134947..135387 | within | 0 |
Gene organization within MGE regions
Location: 129969..145038
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GNX18_RS00630 (GNX18_00625) | - | 129969..130262 (-) | 294 | WP_166214788.1 | HigA family addiction module antitoxin | - |
| GNX18_RS19490 (GNX18_00630) | - | 130262..130447 (-) | 186 | WP_256367352.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| GNX18_RS00640 (GNX18_00635) | - | 130582..131466 (-) | 885 | WP_166214790.1 | A24 family peptidase | - |
| GNX18_RS00645 (GNX18_00640) | pilC | 131480..132694 (-) | 1215 | WP_166214792.1 | type II secretion system F family protein | Machinery gene |
| GNX18_RS00650 (GNX18_00645) | pilB | 132746..134455 (-) | 1710 | WP_166214794.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GNX18_RS00655 (GNX18_00650) | comP | 134947..135387 (+) | 441 | WP_205828022.1 | pilin | Machinery gene |
| GNX18_RS00660 (GNX18_00655) | - | 135438..137186 (+) | 1749 | WP_166214798.1 | DCC1-like thiol-disulfide oxidoreductase family protein | - |
| GNX18_RS00665 (GNX18_00660) | - | 137279..137569 (-) | 291 | WP_166214799.1 | DUF86 domain-containing protein | - |
| GNX18_RS00670 (GNX18_00665) | - | 137741..137914 (+) | 174 | WP_166214801.1 | hypothetical protein | - |
| GNX18_RS00675 (GNX18_00670) | - | 138249..138422 (+) | 174 | WP_166214801.1 | hypothetical protein | - |
| GNX18_RS00680 (GNX18_00675) | - | 138447..138677 (+) | 231 | WP_166214803.1 | hypothetical protein | - |
| GNX18_RS00685 (GNX18_00680) | - | 138780..139055 (+) | 276 | WP_166214805.1 | hypothetical protein | - |
| GNX18_RS00690 (GNX18_00685) | - | 139423..140103 (+) | 681 | WP_166214807.1 | hypothetical protein | - |
| GNX18_RS19500 | - | 140617..140847 (-) | 231 | WP_240914129.1 | hypothetical protein | - |
| GNX18_RS00700 (GNX18_00695) | - | 140844..141173 (-) | 330 | WP_166214809.1 | winged helix-turn-helix domain-containing protein | - |
| GNX18_RS00705 (GNX18_00700) | - | 141487..141774 (-) | 288 | WP_166214811.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| GNX18_RS00710 (GNX18_00705) | - | 141778..142008 (-) | 231 | WP_166214813.1 | CopG family transcriptional regulator | - |
| GNX18_RS00715 (GNX18_00710) | - | 142180..143535 (-) | 1356 | WP_166214815.1 | Fic family protein | - |
| GNX18_RS00720 (GNX18_00715) | - | 143771..144184 (-) | 414 | WP_166214817.1 | DUF86 domain-containing protein | - |
| GNX18_RS00725 (GNX18_00720) | - | 144181..144618 (-) | 438 | WP_138235878.1 | nucleotidyltransferase domain-containing protein | - |
| GNX18_RS00730 (GNX18_00725) | - | 144793..145038 (+) | 246 | WP_138235879.1 | YdcH family protein | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 14421.45 Da Isoelectric Point: 7.5903
>NTDB_id=409594 GNX18_RS00655 WP_205828022.1 134947..135387(+) (comP) [Microbulbifer sp. SH-1]
MKKQQGFTLIELMIVVAIIGILAAVALPAYQDYTIRARVSEGLSLASGAKATVAENIANNGGTIAAGACQGVNVFTTAVG
SVASLGCTDTTGVIRVTMGANAANVALDLTPGSTQGGSGVTWGCAVTSAANNKYVPSECRAAAAGN
MKKQQGFTLIELMIVVAIIGILAAVALPAYQDYTIRARVSEGLSLASGAKATVAENIANNGGTIAAGACQGVNVFTTAVG
SVASLGCTDTTGVIRVTMGANAANVALDLTPGSTQGGSGVTWGCAVTSAANNKYVPSECRAAAAGN
Nucleotide
Download Length: 441 bp
>NTDB_id=409594 GNX18_RS00655 WP_205828022.1 134947..135387(+) (comP) [Microbulbifer sp. SH-1]
ATGAAAAAGCAACAGGGTTTTACTCTTATCGAATTGATGATCGTGGTAGCGATTATTGGTATTCTGGCTGCGGTAGCGTT
GCCTGCGTATCAGGATTACACTATTCGCGCACGCGTTTCCGAAGGCTTAAGCCTTGCATCAGGCGCAAAAGCTACTGTCG
CTGAGAATATCGCGAATAATGGCGGCACCATCGCGGCTGGGGCATGTCAAGGAGTAAATGTATTTACTACGGCAGTTGGT
AGTGTTGCGTCTTTGGGGTGTACTGATACTACAGGTGTTATCCGGGTGACTATGGGGGCTAATGCCGCTAACGTTGCATT
GGATCTGACACCTGGCTCCACTCAGGGCGGATCTGGTGTGACCTGGGGCTGTGCTGTAACTTCTGCTGCTAACAACAAGT
ATGTACCATCCGAATGCCGTGCTGCTGCTGCGGGTAACTAA
ATGAAAAAGCAACAGGGTTTTACTCTTATCGAATTGATGATCGTGGTAGCGATTATTGGTATTCTGGCTGCGGTAGCGTT
GCCTGCGTATCAGGATTACACTATTCGCGCACGCGTTTCCGAAGGCTTAAGCCTTGCATCAGGCGCAAAAGCTACTGTCG
CTGAGAATATCGCGAATAATGGCGGCACCATCGCGGCTGGGGCATGTCAAGGAGTAAATGTATTTACTACGGCAGTTGGT
AGTGTTGCGTCTTTGGGGTGTACTGATACTACAGGTGTTATCCGGGTGACTATGGGGGCTAATGCCGCTAACGTTGCATT
GGATCTGACACCTGGCTCCACTCAGGGCGGATCTGGTGTGACCTGGGGCTGTGCTGTAACTTCTGCTGCTAACAACAAGT
ATGTACCATCCGAATGCCGTGCTGCTGCTGCGGGTAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comP | Acinetobacter baylyi ADP1 |
52 |
100 |
0.534 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
44.512 |
100 |
0.5 |
| pilA2 | Legionella pneumophila str. Paris |
50 |
94.521 |
0.473 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
46.897 |
99.315 |
0.466 |
| pilE | Neisseria gonorrhoeae MS11 |
40.994 |
100 |
0.452 |
| pilA/pilA1 | Eikenella corrodens VA1 |
41.447 |
100 |
0.432 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
39.355 |
100 |
0.418 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
39.865 |
100 |
0.404 |
| pilA | Acinetobacter baumannii strain A118 |
39.726 |
100 |
0.397 |